SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19959

Length: 1600 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene19959 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-FucT domain containing protein	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: your sequence is shorter than subject: 315 - 634

Fln protein: VVTLAVSYYEEKVLPKLLEAGVIRISPFANRLSQEVPPPIQRLRCLANYEALRFAAPISKLAEELVERMIKHSSTTGGKYIAVHLRFEEDMVAFSCCIFDGGEEEKREMDAARERGWRGKFNRTGRIIRPGAIRMNGKCPLTPLEVGIMLRGMGFDNNTSIYLAAGKIYKADKNMFPLRQMFPLLQTKEMLSMPEELAPFKDYSSRMAALDYTVCLHSEVFVTTQGGNFPLSFLMGHRRYLYGGHSKTIKPDKRKLALLLDNPNIRWETFKQQMQAMRRHSDVKGIEIRKVNASVYTFPTPDCMCREKSFGLKV*

Protein Length: 316

Fln nts: CGTCGTGACCTTGGCTGTCAGTTACTATGAAGAAAAAGTTCTCCCTAAACTACTTGAGGCTGGTGTGATACGGATTTCTCCATTTGCCAATCGATTGTCACAAGAGGTTCCACCCCCAATTCAGCGCCTCAGATGTTTGGCTAACTATGAAGCATTACGATTTGCTGCTCCCATTTCTAAACTTGCAGAGGAGTTAGTAGAACGCATGATTAAGCACAGCTCCACCACTGGTGGAAAATATATTGCTGTTCATCTTCGTTTTGAAGAGGACATGGTAGCTTTTTCTTGCTGCATATTTGATGGTGGTGAGGAAGAAAAGAGGGAAATGGATGCTGCTCGAGAAAGGGGTTGGAGGGGCAAGTTCAACAGAACAGGTCGTATTATTAGACCTGGGGCTATCAGGATGAATGGAAAATGCCCTCTAACTCCCTTGGAGGTTGGTATTATGCTGAGAGGAATGGGATTTGATAACAATACCTCAATTTACTTAGCAGCTGGGAAAATATACAAGGCAGACAAGAATATGTTTCCCCTTAGGCAAATGTTTCCTTTGTTGCAAACGAAAGAGATGCTTTCGATGCCAGAGGAACTTGCTCCTTTTAAGGATTATTCCTCAAGGATGGCTGCATTGGACTACACTGTTTGCCTACACAGTGAAGTTTTTGTTACAACTCAAGGGGGAAACTTCCCTCTCAGTTTTTTGATGGGGCATAGGAGATACTTATATGGAGGACACAGTAAGACAATCAAGCCCGACAAACGCAAGTTAGCACTGCTGCTAGACAATCCAAATATAAGATGGGAAACTTTCAAACAACAAATGCAAGCAATGCGACGTCACAGTGATGTTAAAGGAATTGAAATTAGAAAGGTCAATGCTTCAGTATATACCTTTCCTACCCCAGATTGCATGTGCCGTGAGAAAAGTTTCGGTTTGAAGGTCTGA___CTACTATGAACGAAGTATAGTCAAGAAAGGGAGGATTTTTCTTTCTTTCTTTGAATTTACCAATGATGCCGTCGTGCGGTTTTCTGTGTTTTGTTTAGGTGCTTGAGACATTCTTTATCAACACAATCTTGCTGCATTGTCCTCAATTTTTTTTATCCTGGAGAAAAGGATGGATTTATTGATCAGTTACTTCAAGATTTATTGCTGAAAATTCATTGTAGAGCACATTGGCTCTATACAGTTTCCACTTGAGCTTTGATGAGCTATTTGGTAATGGCATTGGAGAAATCTTATCTACGAGCATGCGGGTATCTATCACGGGGCCAGTTTATGTTTCCATAATCAGAAGAATCCCAAGAAGATCCCAGATCAAAGCTGCAAGGAAAATATTAAATAAGCAGAAGCTTGATTGTATAAAATCTGTATACTTTTGTCAGGGAGGTTGTATCACGGCTGATTATTTGGTAACCATTTCAGGGAATGAGTGTTGCCCCATTTTGTCCCGCGGGTTTGGGAGATTGTATCATTTTGTGTTTATGGCTTTGTAAGAATTTTCAGAAGCATGCACGATGGGGAACTTAAGATTAAAGATCCTTGGTGACTGCATGATTATTTCTTTTCTTATTTTCATTTGCAAAAGTCTCTATTCAATTT

Fln Alignment:

Contig19959___SYYEEKVLPKLLEAGVIRISPFANRLSQE-VPPPIQRLRCLANYEALRFAAPISKLAEELVERMIKHSSTTGGKYIAVHLRFEEDMVAFSCCIFD---GGEEEKREMDAARERGWRGKFNRTGRIIRPGAIRMNGKCPLTPLEVGIMLRGMGFDNNTSIYLAAGKIYKADKNMFPLRQMFPLLQTKEMLSMPEELAPFKDYSSRMAALDYTVCLHSEVFVTTQGGNFPLSFLMGHRRYLYGGHSKTIKPDKRKLALLLDNPN---IRWETFKQQMQAMRRHSDVKGI-------EIRKVNASVYTFPTPDCMC
B8LQ81_______________TYYKDEMLPLLKKQKVIHFTHTDSRLANNGLPNSIQKLRCRTNYQALRYTQSIEELGKKLVARMRKN----GKPYIALHLRYEKDMLAFTGCAHNLTLGEAEELREM-RYNVKHWKEKD------IDAEEKRKQGGCPLTPRETALLLKALGYLPTTNIYIAAGEIY-GNGSMRALQNEFPNVFSHSTLATEEELEPFKNYQNRLAALDYILALESDVFLYTYDGNMAKA-VQGHRR--FEGFRKTINPDRENLIKLIDEMDQGQISWNSFASKVKA--THSNRVGAPYLREAGDFPRLEENFYANPFPGCIC

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
455	89	10			0.999919
463	11			88	0.999937
483	87		12		0.999964
493			14	85	0.999981
496	14			85	0.999981
502	87		12		0.992554
504	87	12			0.992554
506	87	12			0.992554
507	87		12		0.992554
509	85	14			0.993533
510	85		14		0.993533
521	83		16		0.994512
522		16		83	0.994512
523		16	83		0.994512
524	16	83			0.994512
529	83	16			0.994512
532		16		83	0.994512
533			16	83	0.994512
566	66			33	0.997452
567	66		33		0.997452
1280	33	66			0.997452
1414	90		10		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
603	617	AAAG AAAG AAAG AAA	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain