SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19869

Length: 383 nt

Origin of reads: Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene19869
TCATGGAATGCGATGATTGCAGGATACGGCAACCACGGCCGTGGGAAAGAGGCGATCCATCTTTTTGAGCAAATGCAACAAGAGCACATCAAACCCAATCACGTCACCTTCTTGGCACTGCTTTCCGCCTGCAGCTATTCAGGTTTGCTTGATGAGGGCTGCCGTTATTTTCAATGCATGAGTCGAGACTATGGAATTGTTCCTAGAGCGATGCATTATGCCCGTTTGGTTGAACTTTACAGTCGTGCTGGGCGTTTGAATGATGCATATGATGTTATTGACAATTTGCCTTTCAAACCTACCGCAAATATTCGCGGTGCCTTGCTTTGTGCCTGCAGAATGCATGGAAATATTGAGTTAGGGACATATGCAGCAGAACACCT

Ace file of the UniGene sp_v2.0_unigene19869 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide, putative [Oryza sativa Japonica Group] gb\|EAZ27214.1\| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]	-	-	4.0e-36	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 177 aas, atg_distance in limit (1-15): atg_distance = 8, your sequence is shorter than subject: 123 - 312

Fln protein: MIAGYGNHGRGKEAIHLFEQMQQEHIKPNHVTFLALLSACSYSGLLDEGCRYFQCMSRDYGIVPRAMHYARLVELYSRAGRLNDAYDVIDNLPFKPTANIRGALLCACRMHGNIELGTYAAEH

Protein Length: 124

Fln nts: TCATGGAATGCG_-_ATGATTGCAGGATACGGCAACCACGGCCGTGGGAAAGAGGCGATCCATCTTTTTGAGCAAATGCAACAAGAGCACATCAAACCCAATCACGTCACCTTCTTGGCACTGCTTTCCGCCTGCAGCTATTCAGGTTTGCTTGATGAGGGCTGCCGTTATTTTCAATGCATGAGTCGAGACTATGGAATTGTTCCTAGAGCGATGCATTATGCCCGTTTGGTTGAACTTTACAGTCGTGCTGGGCGTTTGAATGATGCATATGATGTTATTGACAATTTGCCTTTCAAACCTACCGCAAATATTCGCGGTGCCTTGCTTTGTGCCTGCAGAATGCATGGAAATATTGAGTTAGGGACATATGCAGCAGAACACCT

Fln Alignment:

Contig19869___SWNAMIAGYGNHGRGKEAIHLFEQMQQEHIKPNHVTFLALLSACSYSGLLDEGCRYFQCMSRDYGIVPRAMHYARLVELYSRAGRLNDAYDVIDNLPFKPTANIRGALLCACRMHGNIELGTYAAE
D5ADG9_______________SWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
238		80		20	0.995493
250		14	85		0.993533
251	14	85			0.993533
253			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain