SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19675

Length: 767 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like (Fragment) n=1 Tax=Populus suaveolens RepID=Q1HIU4_9ROSI	-	-	2.0e-36	48%
FL-Next	sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	protein	-	-	1.78877e-33	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	1.78877e-33	62%
Blast2go	Hsp90 protein binding	GO:0051879	Molecular Function	1.78877e-33	62%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
207	75			25	0.996473
308	33		66		0.997452
388	50		50		1.0
414		33		66	0.997452
415	33		66		0.997452
451			85	14	0.993533
457			57	28	1.0
460			14	85	0.993533
466		42		57	1.0
478	42	57			1.0
490	14	85			0.993533
496		85		14	0.993533
516	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain