SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19672

Length: 1259 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19672

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	6.0e-18	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: your sequence is shorter than subject: 299 - 702

Fln protein: KRLKKGSSQGDAEFLNEANVISLVQHRNLVKLLGCCVESSERLLVYEYLENSSLDRIIFDTTKSHSLKWRERYEIIVGTARGLAYLHEESENRIIHRDIKASNILLDNKQRPKITDFGLAKLFAEDQSHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLLLEIVSGRKNHSLAQGTEFLIESTWRLYQAERALEIMETTLEGSYSREEGFRVIKIGLLCVQAASVLRPSMSQVVSMLTNERENLPSPTTPAFVDLDGVFVDANKTSNSAATSSTPPSQVHSAAADPSSGALEPR*

Protein Length: 300

Fln nts: AAACGACTGAAAAAAGGATCAAGTCAAGGAGACGCTGAATTCTTGAATGAAGCAAATGTCATCAGTCTTGTTCAACACAGAAATCTAGTGAAATTGCTTGGTTGCTGTGTTGAAAGCTCAGAAAGGCTCCTGGTTTACGAATACCTCGAGAACAGTAGTCTCGACAGAATTATATTCGATACAACAAAAAGTCATTCACTTAAATGGAGAGAGCGATATGAAATCATAGTTGGAACTGCGCGTGGGTTGGCCTATCTTCACGAGGAGTCTGAAAATCGGATCATCCACAGAGATATTAAAGCTAGCAATATTTTACTGGATAATAAACAAAGACCCAAAATAACAGATTTTGGCTTGGCCAAACTCTTTGCAGAAGATCAGAGCCATGTTAGCACTAGAGTTGCCGGAACTTTAGGCTACATGGCGCCTGAGTACGCCTTGCGCGGGCAGCTGACAGAGAAAGCAGATGTATTCAGCTTTGGAGTTCTTCTACTTGAGATTGTGAGCGGAAGAAAGAATCACAGTTTGGCTCAAGGCACAGAGTTTCTCATCGAATCAACATGGAGACTGTATCAAGCAGAAAGAGCTTTAGAAATTATGGAAACCACATTGGAGGGTAGTTATTCGCGGGAGGAAGGGTTTAGAGTGATTAAAATTGGTCTGCTGTGCGTGCAAGCAGCTTCAGTGTTGCGGCCTTCAATGTCCCAGGTAGTATCGATGCTGACGAATGAGCGAGAAAATCTTCCATCGCCCACAACGCCTGCTTTCGTAGATCTAGATGGTGTTTTTGTTGACGCTAACAAAACATCAAACAGTGCAGCAACTTCTTCAACGCCACCTTCCCAAGTCCATTCTGCAGCTGCTGACCCTTCATCGGGTGCTCTGGAGCCGAGATGA___CTGGATTTCGTCACACCACTCACGCCATAATGTACCTCTAGCAGTTACACATTAAGGCGCGTCAAACGGTGTATTTAAACACTTTGGGGTCCAAAATCTTGATCCAGCAGTGATACTAAATTCAAAGATCAAAGACAAAGCAGTGTGCAAAGAGCAAATTGTCCAGTTGTACGAGATGAGCGATAAAGCAGTGTGCTATTAGTCGATTTTTACTTTAAATTTAAATAGAGTAGATATTCCCGTTGAAATTCCATGTACTGTAAATGCCCTTTTCCAAGATTACTCATGTAAATGCCCTTAACTTTTCTTTATGGTTGCTCTTGATCCATTAAAATTGGTCAGTGTATGGTTATTTTCATCAT

Fln Alignment:

Contig19672___KRLKKGSSQGDAEFLNEANVISLVQHRNLVKLLGCCVESSERLLVYEYLENSSLDRIIFDTTKSHSLKWRERYEIIVGTARGLAYLHEESENRIIHRDIKASNILLDNKQRPKITDFGLAKLFAEDQSHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLLLEIVSGRKNHSLAQGTEFLIESTWRLYQAERALEIMETTLEGSYSREEGFRVIKIGLLCVQAASVLRPSMSQVVSMLTNERENLPSPTTPAFVDLD----------GVFVDXXXXXXXXXXXXXXXXQVHSAAADP-SSGALEPR
C0PPW7_______________KRLFMGTRQADAEFLNEANLISRVQHRNLVKLLGCSVEVSERLLVYEYLQNSSLDKILFDPTKRHLLDWKKRSEIILGTARGLAYLHEESDVRVIHRDIKASNILLDDKHRPKIADFGLARFFAEDQSHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLVLEIISGRKNQSSTEDMEFLIEGTWRLYKANRGLEIMDPALKDSYSWEDGIRAIKIGLLCTQAAAALRPSMFRVVSMLTSEREHLPSPTRPAFIDLDAAGAAQQLKRGRIIDPERTSSSAATSSTTPSETHSAAADPNASSILEPR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
307		33	33	33	0.997753
333	66		33		0.997452
334	66	33			0.997452
340		66	33		0.997452
352		33		66	0.997452
370		66	33		0.997452
466	25		75		0.996473
475	75		25		0.996473
491		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain