SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19669

Length: 811 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19669

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nonsense-mediated decay UPF3 [Medicago truncatula]	-	-	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	60%
Blast2go	smg-4 upf3-like protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of nonsense-mediated decay, UPF3	IPR005120	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
502		11	88		0.923564
503	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain