SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19666

Length: 500 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene19666
CGTCGTGACCTTGGCTGTCACGCGCATTGTTCCCATATGAAGCGCCGCAGTTTTCAGTCCAAATTCCAGAAAGCTTGATACGGGATCGAATTATGAATCTCGAGATCCAGCAGGGTTGACATTGGGTCGAATAATCAATAACTCGTCGTGACCTTGGCTGTCACTCAAACACGATTGATTCGATTATACTGTGGTGAAAGTTTGAATGCAATACACGCGTGTTTGAACAACAGATACAGCTCGAGTATAGTGTGTTTCAAAACCCTATTTCTACATTTGGGGAACAATTAATTCGCGAGGATGAGGGAGCCGACCGATATTAGAGCTATGAATGTACAGAATGGTGCAGGAACGCACGACACTGAAAAACAAGAAGATATTAGTGCTGATGATGGGCATGTTAGAACAGGGAATGTGTGGACAGCAACAGCTCATGTGATTACGGCGGTGATAGGCGCAGGAGTTTTATCTTTGCCATGGAGTGTTGCTCAGCTTGGATG

Ace file of the UniGene sp_v2.0_unigene19666

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid permease n=1 Tax=Populus trichocarpa RepID=B9MWF9_POPTR	-	-	4.0e-11	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	amino acid permease	-	-	3.62986e-12	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg: Distance to subject end: 415 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 66 - 508

Fln protein: MREPTDIRAMNVQNGAGTHDTEKQEDISADDGHVRTGNVWTATAHVITAVIGAGVLSLPWSVAQLG

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACGCGCATTGTTCCCATATGAAGCGCCGCAGTTTTCAGTCCAAATTCCAGAAAGCTTGATACGGGATCGAATTATGAATCTCGAGATCCAGCAGGGTTGACATTGGGTCGAATAATCAATAACTCGTCGTGACCTTGGCTGTCACTCAAACACGATTGATTCGATTATACTGTGGTGAAAGTTTGAATGCAATACACGCGTGTTTGAACAACAGATACAGCTCGAGTATAGTGTGTTTCAAAACCCTATTTCTACATTTGGGGAACAATTAATTCGCGAGG_-_ATGAGGGAGCCGACCGATATTAGAGCTATGAATGTACAGAATGGTGCAGGAACGCACGACACTGAAAAACAAGAAGATATTAGTGCTGATGATGGGCATGTTAGAACAGGGAATGTGTGGACAGCAACAGCTCATGTGATTACGGCGGTGATAGGCGCAGGAGTTTTATCTTTGCCATGGAGTGTTGCTCAGCTTGGATG

Fln Alignment:

Contig19666___ISADDGHV-RTGNVWTATAHVITAVIGAGVLSLPWSVAQLG
D5A7Z1_______________ITDEDGHPQRTGDVWTASSHVITAVIGSGVLSLAWSMSQLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain