SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19639

Length: 2056 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene19639
CGTCGTGACCTTGGCTGTCACTCATCGTTTCGTTCAATTCCACCCTTCACCCACCGCCACCCCGGAAGTCTGTTTTTCTGTACAATTTTGACCACTGGGCATCCTCTATACGTAAAATTCTGGTTACCCACCAGGAAGTCTCGCGTGTTTTGTAGACTTCTAGAAGCGAGGACTGAGCTCCCGGAGGCATCTGTTTTAAAGCTTGCTTTGAGCTTTCTTTTCCAGTAGTTAGTTATTTGATTCATATTGGTTGCAGAGGATTTTCAGAGATTGATGATGAGTGCTGAAGCTGCTATGGAGAGGGAGAGTTGTTTCATGGATGAAATGCGCAGGCCGCAGAGGAAGAAGAAGACCGACGCAGAGGATGATTTTGACGAGTGTTATTATACTCATATGTGCAAGATTTGCAAGAAGAAGTTCGTCTCAGGGCGGGCTTTTGGCGGTCATATGAGAATTCATGGCCCTGTGGCCACTGCCGCCGCCGCTGCTGCTGAGAGCAATGGGAAAAATCTGGAGCCGCAGAGGAAGAGATCCCGTGCTGAAGAGATTCGAAGGCCTGACGTCGAGGACGAGGAGGATTCGCAGCTTGATGGATACGAGCGGAGCTTGATGGGTCGGGAGTTCGAGACCCGGGACGCTAATCCATCTAGTTTTCTGAGAAAGGAGTTCTTGTCATGGAAAGCCGACCGAGATGACTGGGAGTATTCTGAAGAAGAAGAAGAGGAAGAGGAAGGGCTTGCTGATGGTGGTCTTCAGGATAGTACTGACAGTGAGGCCGAGACCGACATGCCTGGATACCCGAGTGGAGATTCAAGGTTGATGAAGGGAAAGAGATCCAAGAGGTCTAGGTATCGAGTCTCGCCGGCTGCTCATTTTCAGGGCGCAGAGAATTCTGTTTCTGAAGAAGAAGACATGGCGATCTGTCTGGTCATGCTGGCAAGAGGAGTGAATACTCGAAAGTCAAAGGATGGAGCTGAGGAGTCTGCTGATTCTGGATCAAGGGACATGTCGTGACCTTTGCTGTCGCTCCTCGATTGGATGCTTTCAAGATTATGAAGAAAAGAAGGATTAAGAGGGCTGAGGACGAGACTGAAGAAGGTAAGAAAATTATGTATGAGTGCAGTACATGTAATAAGGTTTTTCATTCATACCAAGCTCTGGGAGGCCACAGGGCCAGCCACAAGAAAGCCAAGGGCGTTTCACCCAAGCTTGATGAGAATGAGAGCTTGGTGGAAGAGGATATTACTGATGAGGATCGCATGATCAGGTCAGGCCACGAATTGCCCAACAGTTTCCACAAGCCCAGTCCTCTCAAAGAAATAATGAGCAGAGAAGAAACTGATGAGACTTTAGCAACAGCAACAGGAATCCCTAATAAGAAGAACAATTCCATCAAAGTCCATGAATGTTCAATCTGTCACAAGGTTTTTGCCACTGGACAAGCCTTGGGCGGTCACAAGAGGTGCCACTGGGCCACTCCAGGTGGAAATTCGGACACTACTAGCACCATTTCCAGTAACACCAAGGAGCCTCCCCTGCTGCCCCAGAATAGTGGTGGGAGAGGAATTGGAGGAGAGTTGTTGGATCTCAACTTGCCTGCTTCTACTGATGCTGAGGAGGATGACAATTGTAAGTTTGCTAATGATGCAGTGGGGTTTTCTCACATGGCTTCTGCTGCTACTGATGTTGTTGATGCTGCTGAAGCTCATAGCAAAATCAGCCTTCCTTTCTTTCAATCATGGTGGACAGACCATCACCATCCCGTGCCGCGCCCCGGACTGTTTCTGTACAATAGCCTCACTCATTTGTCTCGCAGCAGCGAAGATGAAGCAGATAGTAATCTAGGGATCAAGATTGGGAAGCTAGGGAACAAAATTGGGTCTGGTATGGTAGAAGAGCAGGACTTCCACAACAGGGTTCAATCGTGGTTGAAATTGTGAGCTACATGTAGAGATAGGGATTAAGAAAATTTGTCATTGTTTGATTCTTTTTACAGTCTTTCATCCTCCTGTACACTTAAAGGGATTAAAGAAATGCTTTCATTAAATGTGCTCCC

Ace file of the UniGene sp_v2.0_unigene19639 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cys2/His2 zinc-finger transcription factor [Silene latifolia]	-	-	4.0e-31	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	zinc finger protein	-	-	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P1

Fln msg: your sequence is longer than subject: 296 - 158

Fln protein: MKKRRIKRAEDETEEGKKIMYECSTCNKVFHSYQALGGHRASHKKAKGVSPKLDENESLVEEDITDEDRMIRSGHELPNSFHKPSPLKEIMSREETDETLATATGIPNKKNNSIKVHECSICHKVFATGQALGGHKRCHWATPGGNSDTTSTISSNTKEPPLLPQNSGGRGIGGELLDLNLPASTDAEEDDNCKFANDAVGFSHMASAATDVVDAAEAHSKISLPFFQSWWTDHHHPVPRPGLFLYNSLTHLSRSSEDEADSNLGIKIGKLGNKIGSGMVEEQDFHNRVQSWLKL*

Protein Length: 297

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTTCGTTCAATTCCACCCTTCACCCACCGCCACCCCGGAAGTCTGTTTTTCTGTACAATTTTGACCACTGGGCATCCTCTATACGTAAAATTCTGGTTACCCACCAGGAAGTCTCGCGTGTTTTGTAGACTTCTAGAAGCGAGGACTGAGCTCCCGGAGGCATCTGTTTTAAAGCTTGCTTTGAGCTTTCTTTTCCAGTAGTTAGTTATTTGATTCATATTGGTTGCAGAGGATTTTCAGAGATTGATGATGAGTGCTGAAGCTGCTATGGAGAGGGAGAGTTGTTTCATGGATGAAATGCGCAGGCCGCAGAGGAAGAAGAAGACCGACGCAGAGGATGATTTTGACGAGTGTTATTATACTCATATGTGCAAGATTTGCAAGAAGAAGTTCGTCTCAGGGCGGGCTTTTGGCGGTCATATGAGAATTCATGGCCCTGTGGCCACTGCCGCCGCCGCTGCTGCTGAGAGCAATGGGAAAAATCTGGAGCCGCAGAGGAAGAGATCCCGTGCTGAAGAGATTCGAAGGCCTGACGTCGAGGACGAGGAGGATTCGCAGCTTGATGGATACGAGCGGAGCTTGATGGGTCGGGAGTTCGAGACCCGGGACGCTAATCCATCTAGTTTTCTGAGAAAGGAGTTCTTGTCATGGAAAGCCGACCGAGATGACTGGGAGTATTCTGAAGAAGAAGAAGAGGAAGAGGAAGGGCTTGCTGATGGTGGTCTTCAGGATAGTACTGACAGTGAGGCCGAGACCGACATGCCTGGATACCCGAGTGGAGATTCAAGGTTGATGAAGGGAAAGAGATCCAAGAGGTCTAGGTATCGAGTCTCGCCGGCTGCTCATTTTCAGGGCGCAGAGAATTCTGTTTCTGAAGAAGAAGACATGGCGATCTGTCTGGTCATGCTGGCAAGAGGAGTGAATACTCGAAAGTCAAAGGATGGAGCTGAGGAGTCTGCTGATTCTGGATCAAGGGACATGTCGTGACCTTTGCTGTCGCTCCTCGATTGGATGCTTTCAAGATT_-_ATGAAGAAAAGAAGGATTAAGAGGGCTGAGGACGAGACTGAAGAAGGTAAGAAAATTATGTATGAGTGCAGTACATGTAATAAGGTTTTTCATTCATACCAAGCTCTGGGAGGCCACAGGGCCAGCCACAAGAAAGCCAAGGGCGTTTCACCCAAGCTTGATGAGAATGAGAGCTTGGTGGAAGAGGATATTACTGATGAGGATCGCATGATCAGGTCAGGCCACGAATTGCCCAACAGTTTCCACAAGCCCAGTCCTCTCAAAGAAATAATGAGCAGAGAAGAAACTGATGAGACTTTAGCAACAGCAACAGGAATCCCTAATAAGAAGAACAATTCCATCAAAGTCCATGAATGTTCAATCTGTCACAAGGTTTTTGCCACTGGACAAGCCTTGGGCGGTCACAAGAGGTGCCACTGGGCCACTCCAGGTGGAAATTCGGACACTACTAGCACCATTTCCAGTAACACCAAGGAGCCTCCCCTGCTGCCCCAGAATAGTGGTGGGAGAGGAATTGGAGGAGAGTTGTTGGATCTCAACTTGCCTGCTTCTACTGATGCTGAGGAGGATGACAATTGTAAGTTTGCTAATGATGCAGTGGGGTTTTCTCACATGGCTTCTGCTGCTACTGATGTTGTTGATGCTGCTGAAGCTCATAGCAAAATCAGCCTTCCTTTCTTTCAATCATGGTGGACAGACCATCACCATCCCGTGCCGCGCCCCGGACTGTTTCTGTACAATAGCCTCACTCATTTGTCTCGCAGCAGCGAAGATGAAGCAGATAGTAATCTAGGGATCAAGATTGGGAAGCTAGGGAACAAAATTGGGTCTGGTATGGTAGAAGAGCAGGACTTCCACAACAGGGTTCAATCGTGGTTGAAATTGTGA___GCTACATGTAGAGATAGGGATTAAGAAAATTTGTCATTGTTTGATTCTTTTTACAGTCTTTCATCCTCCTGTACACTTAAAGGGATTAAAGAAATGCTTTCATTAAATGTGCTCCC

Fln Alignment:

Contig19639___NNSIKVHECSICHKVFATGQALGGHKRCHW
D5A8P1_______________SEKVKGHECSICHKIFPSGQALGGHKRCHW

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
234	75		25		0.996473
651	66		33		1.0
689	16		83		0.994512
690		16	83		0.994512
771		40	60		1.0
926			25	75	0.996473
929			25	75	0.996473
933			25	75	0.996473
934		25	75		0.996473
935		25		75	0.996473
937	25	75			0.996473
938			25	75	0.996473
943	25			75	0.996473
945	75		25		0.996473
1030			33	66	1.0
1032	33	33		33	0.997753
1033		33	33	33	0.997753
1034		33		66	0.997452
1035			66	33	0.997452
1036	33		66		1.0
1041	33	33			0.997753
1042	33	33			0.997753
1043	33			66	1.0
1047		33		66	1.0
1048	33	66			1.0
1050			33	66	1.0
1051	33			66	1.0
1053	50		50		1.0
1124		33		66	0.997452
1266		66		33	0.997452
1399		33		66	0.997452
1443		50	25		0.995533
1446	60	40			1.0
1447		80	20		0.995493
1448	20	80			0.995493
1449	20	80			0.995493
1679	75	25			0.996473
1680	75	25			0.996473
1875	20	80			0.995493
1876		80	20		0.995493
1881	20		80		0.995493
1882		20	80		0.995493
1886		20		80	0.995493
1887	20	80			0.995493
1890			20	80	0.995493
1891		80		20	0.995493
1893	20			80	0.995493
1898			20	80	0.995493
1990	66		33		0.997452
1992		66	33		0.997452
1993	66			33	0.997452
1997	33			66	0.997452
1998			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1335	1348	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain