SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19605

Length: 1377 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene19605 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] emb\|CAB80112.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	91%
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	91%
Blast2go	response to water deprivation	GO:0009414	Biological Process	91%
Blast2go	growth	GO:0040007	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	phosphorylation	GO:0016310	Biological Process	91%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	91%
Blast2go	triglyceride biosynthetic process	GO:0019432	Biological Process	91%
Blast2go	regulation of anion channel activity	GO:0010359	Biological Process	91%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	91%
Blast2go	leaf development	GO:0048366	Biological Process	91%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	91%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	91%
Blast2go	protein phosphatase binding	GO:0019903	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%
Blast2go	regulation of reactive oxygen species metabolic process	GO:2000377	Biological Process	91%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Orotidine 5'-phosphate decarboxylase domain	IPR001754	-	-
Sma3	Kinase-associated KA1	IPR001772	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Orotate phosphoribosyl transferase, clade 1	IPR004467	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Orotidine 5'-phosphate decarboxylase	IPR014732	-	-
Sma3		IPR015740	-	-
Sma3		IPR015741	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Orotidine 5'-phosphate decarboxylase, active site	IPR018089	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB4

Fln msg: atg_distance in limit (1-15): atg_distance = 4,

Fln protein: MDRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKEVLLTPTHLAILMEYAAGGELFERICQAGRFSEDEARFFFQQLISGVSYCHAMQICHRDLKLENTLLDGSTAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIGRILSAQYSIPNYVYISAECRHLLSRIFVANPAKRIVIPEIRNHPWFLKNLPRDLMEGAEASYQHDDPEHPTQSVEEIMRILQEARILPGSACKAANDHPFQFADPDMFGDAEADGEEDIESSGDFVCAV*

Protein Length: 345

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGATCGATA_-_ATGGATCGTTACGAGTTAGTTAAGGACATCGGGTCTGGTAATTTCGGAGTGGCGAGGCTCGTGCGGGACAAGAAGACACGAGAGCTCGTTGCAGTCAAGTATATCGAGCGAGGCCAAAAGATTGATGAAAATGTGAGGCGGGAGATTATTAATCACAGATCTCTGCGGCATCCCAACATAGTTCGCTTCAAGGAGGTATTGCTGACTCCCACCCATCTAGCTATACTCATGGAATACGCAGCAGGTGGGGAGCTATTTGAGCGCATATGCCAGGCGGGACGTTTTAGTGAGGATGAGGCCAGATTTTTCTTTCAACAACTGATATCTGGAGTCAGCTATTGTCATGCCATGCAAATATGCCACCGAGATCTTAAGCTAGAGAACACGCTGTTAGACGGAAGCACTGCCCCCCGGCTGAAAATCTGTGACTTTGGCTATTCGAAGTCTTCTCTATTGCATTCCCAACCGAAATCAACAGTGGGAACGCCCGCCTACATTGCTCCAGAGGTTCTCTCCAAGAAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGGGTGACTTTGTACGTGATGCTGGTCGGCGCTTATCCTTTCGAAGATCCAGAGGATCCCAAAAACTTTAGAAAAACCATTGGGAGAATATTAAGCGCCCAATATTCAATACCGAACTATGTATACATATCTGCAGAATGCAGACACCTGCTGTCAAGGATTTTTGTGGCCAATCCTGCCAAGAGGATAGTGATTCCTGAGATAAGAAACCATCCATGGTTCTTAAAGAACCTACCTAGGGATTTAATGGAAGGAGCAGAGGCAAGCTACCAACATGATGATCCAGAGCACCCGACTCAAAGTGTTGAGGAAATCATGAGGATACTGCAAGAGGCAAGAATACTGCCGGGGAGCGCTTGCAAGGCTGCAAATGATCACCCGTTCCAGTTTGCAGATCCAGACATGTTTGGAGATGCAGAGGCTGATGGTGAGGAGGATATTGAGAGCAGCGGGGACTTTGTGTGTGCAGTCTAA___ATCTTGAATGAGTAGATCTTCAAGCTCATATCCAACTCCGCCCATGAGGCGGGGCACTGGGTTGTGTGTGAATGTATGATGCTTCATATTCAAATGAATAGATCCGCAGGGTCATATCCAACTCCGCCCATAAGGAGAGAAATTAGGCTAAACTTGTGAATGTATGATGCTGCGGTTACAAGTTACACAGTAGTCGCTGTGGTATATTTGTAAGTTTGGACATGTTACTCCCTCTGGTATATTTGTAAGTTTGGACATGTTAAACATTATTATGTATATTCCAAAATCCATTGTATGATGGTAACTTTG

Fln Alignment:

Contig19605___DRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKEVLLTPTHLAILMEYAAGGELFERICQAGRFSEDEARFFFQQLISGVSYCHAMQICHRDLKLENTLLDGSTAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIGRILSAQYSIPNYVYISAECRHLLSRIFVANPAKRIVIPEIRNHPWFLKNLPRDLMEGAEA-SYQHDDPEHPTQSVEEIMRILQEARI-LPGSACKAANDHPFQFADPDM
B8LKB4_______________DRYELVKDIGSGNFGVARLMRDKQTKELVAVKYIERGEKIDENVQREIINHRSLKHPNIVRFREVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEILSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDDPRNFKKTIGRILGVQYTIPDYVHVSVECRHLLSRIFVADPDKRITIPEIRNHEWFLKNLPADLLDAADTISNQCDDLDQPSQSIDDIMRIIAEARIPAPGSGLGQYFGDSFELDDMDL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
972		11		88	0.923564
1063	75			25	1.0
1064	75		25		1.0
1065	25	75			1.0
1068	25	75			1.0
1070	50	50			1.0
1074	14			85	0.999981
1075	14		85		0.999981
1077		87	12		0.999964
1078	87			12	0.999964
1079		12		87	0.999964
1081		12		87	0.999964
1098		85		14	0.999981
1099		85	14		0.999981
1102		85	14		0.999981
1107	15			84	0.999986
1108			84	15	0.999986
1110		18	81		0.999994
1111	18			81	0.999994
1113			18	81	0.999994
1114			18	81	0.999994
1115		81		18	0.999994
1118		18		81	0.999994
1174	11		88		0.923564
1180	11	88			0.923564
1183	88	11			0.923564
1184	11		88		0.923564
1187	88		11		0.923564
1191	11		88		0.923564
1192		11		88	0.923564
1195		11		88	0.923564
1196			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain