SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19540

Length: 382 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene19540
CGTCGTGACCTTGGCTGTCACTCAGTTTGGGTTCCATACCCACAATATAGGAGCAGCTGAGAGGTGAGGACAGGACAGGACATATCGTAGAAGGAAAAAAGTTCCAATCTTTTTCTCATCTTGTACTGTCCTCCTTGCGAGTCGCTTTCATGCCACGCGAACATTTTATACATGACAGACTCAGTCCGTATTAGACCAATCAATTCAATTCGTGTTTCAGGTCCCTTCCTGCATCTGTTGATTTTGGGAGTTGTGGAATCCAAGGATGGGACCATTTCTGCAGCATCGGCATATACAGTTCACCATGAAGCTGTTCAAGACAGAGATATGAAATTCTTGACCAAGGCTGTTGAAGAAGCATACGATGCAGTTAATTGTGGCC

Ace file of the UniGene sp_v2.0_unigene19540

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Guanine deaminase, putative n=1 Tax=Ricinus communis RepID=B9RES9_RICCO	-	-	4.0e-10	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	cytidine deaminase	-	-	9.66371e-15	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	CMP/dCMP deaminase, zinc-binding	IPR002125	-	0.0	-
Sma3	APOBEC/CMP deaminase, zinc-binding	IPR016192	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2F6

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 70 - 186

Fln protein: MTDSVRIRPINSIRVSGPFLHLLILGVVESKDGTISAASAYTVHHEAVQDRDMKFLTKAVEEAYDAVNCG

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGGTTCCATACCCACAATATAGGAGCAGCTGAGAGGTGAGGACAGGACAGGACATATCGTAGAAGGAAAAAAGTTCCAATCTTTTTCTCATCTTGTACTGTCCTCCTTGCGAGTCGCTTTCATGCCACGCGAACATTTTATAC_-_ATGACAGACTCAGTCCGTATTAGACCAATCAATTCAATTCGTGTTTCAGGTCCCTTCCTGCATCTGTTGATTTTGGGAGTTGTGGAATCCAAGGATGGGACCATTTCTGCAGCATCGGCATATACAGTTCACCATGAAGCTGTTCAAGACAGAGATATGAAATTCTTGACCAAGGCTGTTGAAGAAGCATACGATGCAGTTAATTGTGGCC

Fln Alignment:

Contig19540___VVESKDGTISAASAYTVHHEAVQDRDMKFLTKAVEEAYDAVNCG
A9P2F6_______________VVESKDGTIYAAPAFTGHQEAVQDRDLKFLSKAVEEAYSGVNCG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
126		75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
67	82	AGGAC AGGAC AGGAC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain