SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19404

Length: 1839 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19404

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	-	-	2.0e-24	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	uncharacterized protein	-	-	9.55056e-32	71%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
691	83		16		0.994512
692			83	16	0.994512
695	85		14		0.993533
697		85	14		0.993533
699		14	85		0.993533
702		28		71	1.0
707		14		85	0.993533
714	85			14	0.993533
806		14		85	0.993533
853	86		13		0.999973
864	87		12		0.999964
865	87			12	0.999964
869		87		12	0.999964
984	10	90			0.90298
986		90		10	0.90298
1101		75		25	0.996473
1102	75	25			0.996473
1214	66			33	0.997452
1218			33	66	0.997452
1580	75	25			0.996473
1659	25		75		0.996473
1721		25		75	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
1141	1153	GCA GCA GCA GCA G	13
1203	1214	CAT CAT CAT CAT	12
1380	1394	GCA GCA GCA GCA GCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain