SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19378

Length: 402 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene19378
CGTCGTGACCTTGGCTGTCACTCAGGAAGGTGGATTTGTTGCTGATAATTTAAATGAATTTAACACAGTTACCAGTCAGTTAAGTTCTGTAGGGGTAAATTTTGATGATGAAGCTAGGACTATGCTATTTCTATGCTTATTGTTAGAAAGTTAGAATGGTCTGGTTATGGCTATTAGTAACTCTGTCTCTAGATCTAGTACTTTAAAGTTTGATGATGTTGTTGGTAATATCCTTAGTGAGGAAATGCGATGGAAAAGTTTCGGTGAGGCATAAGGTAATGCTTTGACTGCAGAGAATAGGGGAAGAAAAATGGAAAGAGGAAGGAGCCCAGGGAATCATAGTAATTCAAGAAAATTCAGATCCAAATCCAGATTAGGGATAGTGTGTTGGAAATGTGGAAG

Ace file of the UniGene sp_v2.0_unigene19378

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%
Blast2go	hypothetical protein VITISV_028182 [Vitis vinifera]	-	-	1.59676e-22	60%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5ADV4

Fln msg: Distance to subject end: 571 aas, your sequence is shorter than subject: 133 - 815

Fln protein: VVTLAVTQEGGFVADNLNEFNTVTSQLSSVGVNFDDEARTMLFLCLLLES*NGLVMAISNSVSRSSTLKFDDVVGNILSEEMRWKSFGEA*GNALTAENRGRKMERGRSPGNHSNSRKFRSKSRLGIVCWKCG

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAGGTGGATTTGTTGCTGATAATTTAAATGAATTTAACACAGTTACCAGTCAGTTAAGTTCTGTAGGGGTAAATTTTGATGATGAAGCTAGGACTATGCTATTTCTATGCTTATTGTTAGAAAGTTAGAATGGTCTGGTTATGGCTATTAGTAACTCTGTCTCTAGATCTAGTACTTTAAAGTTTGATGATGTTGTTGGTAATATCCTTAGTGAGGAAATGCGATGGAAAAGTTTCGGTGAGGCATAAGGTAATGCTTTGACTGCAGAGAATAGGGGAAGAAAAATGGAAAGAGGAAGGAGCCCAGGGAATCATAGTAATTCAAGAAAATTCAGATCCAAATCCAGATTAGGGATAGTGTGTTGGAAATGTGGAAG

Fln Alignment:

Contig19378___EGGFVADNLNEFNTVTSQLSSVGVNFDDEARTMLFLCLLLES*NGLVMAISNSVSRSSTLKFDDVVGNILSEEMRWKSFGE--A*GNALTAENRGRKMERGRSPG--NHSNSRKFRSKSRLG--IVCWKCG
A5ADV4_______________ENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEK-LKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain