SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19373

Length: 723 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19373

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDC27 domain containing protein	-	-	1.0e-05	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	unknown [Picea sitchensis]	-	-	2.10615e-42	80%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
108		87		12	0.992554
109	87			12	0.992554
110		87	12		0.992554
111	87		12		0.992554
112			12	87	0.992554
157	90			10	0.90298
160			90	10	0.90298
162	10	90			0.90298
163		10		90	0.90298
165		10		90	0.90298
166	10	90			0.90298
213		60	40		1.0
242	90			10	0.90298
382		12		87	0.992554
386		87	12		0.992554
492	87			12	0.992554
496	87			12	0.992554
497		12		87	0.992554
499		12		87	0.992554
501	71			28	1.0
577			80	20	0.995493
578			80	20	0.995493
579		20	80		0.995493
580			20	80	0.995493
622	66	33			0.997452
624			66	33	0.997452
625	66			33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
503	518	AGG AGG AGG AGG AGG A	16
639	653	GAA GAA GAA GAA GAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain