SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19302

Length: 1779 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene19302 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase 2 [Musa acuminata AAA Group]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	probable pectate lyase 15	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg:

Fln protein: MYNRSILTCIVLIGILCFHGGAATRSFGSLVAQDSRRRNEAAPAKANVTTTAWEKDPDSVVQMVQRSIDNSTARRELAYLSCGTGNPIDDCWRCDPEWDRNRKRLADCGIGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKREDNNENEWRQWNWRSEGDMLLNGAFFVSSGAGAASAYAKASSLGARPSSLVQPLTATAGVLTCRRGVRC*

Protein Length: 436

Fln nts: ATCCATTAATGCTCAAATCTGTGCGGTCTATAAGAACAAGACCGGCAAGCCTGCTGATGGGGACTGAGAGTTCAGAGGCAACTACCACTTCTGTCGGCCACGCATCCGAACCTTCTCTTTTCCCTTTCCCATTCCCAAGCTCTGCTACTGCAAGAGCACTGGGAATGCTTTTTCTCCTACTTTCCATTGTTTCTGTTACTACATTCATGTCGCTTGGGAGTGTTTAGAGCTGAAGCATTGAACTCTCTTTAACAAAAGATTTTGCAATTACTGTTTGCTTTGAGTACAGAGACCGGATCTGGTCCTAAATTTGTAACTAGTGAGTTTTGGGTGTTTACAAAG_-_ATGTACAATCGGAGTATCTTGACCTGCATTGTCTTGATTGGAATCCTCTGCTTCCATGGTGGGGCGGCAACAAGGTCATTTGGCTCTCTGGTTGCACAGGATTCGAGGAGGCGGAATGAAGCAGCTCCCGCCAAAGCCAATGTCACTACTACTGCTTGGGAAAAAGATCCAGACAGCGTAGTGCAGATGGTTCAAAGAAGCATTGACAACAGCACCGCAAGGCGGGAGCTGGCCTACCTGTCATGCGGGACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCGAGTGGGACCGTAACAGAAAACGTCTGGCAGACTGCGGCATTGGCTTCGGCAGGAATGCTATTGGAGGCAAGAATGGGAGGTTTTACCGGGTCACGGATCCCAACGATTACGATGCTGTGAACCCGAGACCGGGCACTCTGCGTCATGCCGTGATTCAAACAGAGCCTCTCTGGATCGTCTTCGAGAGAGACATGGTGATCACACTGAAGGAGGAGCTGATCATGAACAGTTTCAAGACAATTGACGGAAGGGGCGTCAATGTCCACATTGCAAACGGGCCCTGCATCACTGTTCAGTATGTGACTAACATCATTATACATGGCATTCACGTTCATGATTGTAAGCCTGCAGGAAATGCTATGGTAAGGGACTCTCCCACGCATTATGGGTGGAGAACTATGTGCGATGGAGATGGAATCTCCATCTTTGGAGGAAGCCACATTTGGGTGGACCATGTCTCCTTGTCCAACTGTGCTGACGGTCTCATTGACGCCATCATGGGATCCACTGCTATTACCGTTTCAAACAGCTATTTCACTCACCACAATGAGGTGATGTTGTTGGGTCACAGTGATAGCTATACTCCCGATGTCAACATGCAGGTCACGATTGCATTTAATCATTTTGGGGAAGGTCTTAGGCAGAGAATGCCCAGGTGCAGGCATGGATACTTCCATGTGGTAAACAATGACTACACTCACTGGGAAATGTACGCAATTGGGGGCAGTGCAAACCCCACAATCAACAGTCAAGGCAATAGATTCTCGGCACCTGCAGACCCCTTTGCCAAAGAGGTAACAAAGAGGGAAGACAACAATGAGAATGAATGGAGACAGTGGAACTGGAGATCGGAAGGAGATATGCTGCTGAACGGTGCATTTTTTGTTTCATCGGGAGCAGGGGCGGCCTCGGCGTATGCAAAAGCATCGAGTCTGGGAGCCAGGCCTTCCAGCCTCGTCCAACCGCTTACCGCGACTGCAGGTGTACTCACTTGCAGGAGAGGAGTTCGCTGCTAA___CACCCTCTACTACTAACCCATTTGCTGACCCACCAAGTTCAAGTTCAAGTTCAAGTTCAAGTTCAACCAACCAGTGAATGTGAAGTAATCATTATTTTGGCAATTAAGCAACTCCCATTAACGCCCATATCT

Fln Alignment:

Contig19302___MYNRSILTCIVLIGILCFHGGAATRSFGSLVAQDSRRRNEAAPAKANVTTTAWEKDPDSVVQMVQRSIDNSTARRELAYLSCGTGNPIDDCWRCDPEWDRNRKRLADCGIGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKXXXXXXXXXXXXXXRSEGDMLLNXXXXXXXXXXXXXXXXXXXXXXARPSSLVQPLTATAGVLTCRRGVRC
B8LQ36_______________MKKQSILSCMLLIGILCIHSGAAEKPFGSLFAENSREAGLA-------NTTAVEEDPESVVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRDALGGKHGSFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQGNAMVRDSPTHYEWRT-SDGDGISIFGGSHVWVDHVSLSNCADGLIDATMGSTAITISNSYFTHHNEVMLLGHSDSHTSDVKMRVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGAYFTPSGAGESSAYIRASSLPARPSSLVGPLTQNAGVLFCRKGGRC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
88	20		80		0.995493
98		20		80	0.995493
125		20		80	0.995493
393	25			75	0.996473
396		75		25	0.996473
1600	92		7		0.999602
1719		80	20		0.999996
1720		71		28	1.0
1721		83	16		0.994512
1722	16	66	16		0.988813
1723	83			16	0.994512
1724	16		16	66	0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
67	99	TTGAAC TTGAAC TTGAAC TTGAAC TTGAAC TTG	33

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain