SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19298

Length: 685 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19298

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0041 domain containing protein	-	-	1.0e-32	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	uncharacterized protein	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0041	IPR005336	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
3			66	33	0.997452
93	33		66		0.997452
152		33		66	0.997452
270	33		66		0.997452
296	33		66		0.997452
297		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
560	571	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain