SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19187

Length: 655 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19187

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chemocyanin n=2 Tax=Zea mays RepID=B6TSH8_MAIZE	-	-	4.0e-22	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	chemocyanin precursor	-	-	2.96686e-37	72%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Cupredoxin	IPR008972	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
41	66		33		0.997452
114	25		75		0.996473
299	44		55		1.0
364			60	40	1.0
365		20		80	0.995493
412	83		16		0.994512
431		16		83	0.994512
499	62		37		1.0
663		20		80	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
147	158	CTC CTC CTC CTC	12
525	538	TA TA TA TA TA TA TA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain