SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19161

Length: 407 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene19161
GTTGAGATTATTGATCACATAATTGAACTTATGACTGATCCTTTTGGGAATTATCTTGTGCAAAAGCTTTTGGAAGTTTGTAATGAAGACCAAAGGATGCAAATTCTTCATGCAATAACTGGCAAACCAGGAGAGCTTGTCAATATATCACTAAATATGCATGGAACACGTGCAGTACAAAAGTTGATAGAAACACTTGAGACTCCACAACAGGTTTCCATGGTCACGTCCTCTCTTATACCAGGTGTTGTGACCCTCATAAAGGACCTTAATGGTAATCATGTTGTGCAACGTTGCCTGCAGTGCCTTGACAATGAAGACAGTCAGTTTCTTTTGATGCTGCAGCAGTACATTGTGCTGAGATTGCAACCCATCGACATGGATGCTGTGTGTTGCAACGATGTGTT

Ace file of the UniGene sp_v2.0_unigene19161 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO	-	-	79%
FL-Next	sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	rna binding	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LM20

Fln msg: Overlapping hits, possible frame ERROR between 333 and 333, Distance to subject end: 147 aas, your sequence is shorter than subject: 136 - 515

Fln protein: VEIIDHIIELMTDPFGNYLVQKLLEVCNEDQRMQILHAITGKPGELVNISLNMHGTRAVQKLIETLETPQQVSMVTSSLIPGVVTLIKDLNGNHVVQRCLQCLDNEDSQFxxDAAAVHCAEIATHRHGCCVLQRCV

Protein Length: 137

Fln nts: GTTGAGATTATTGATCACATAATTGAACTTATGACTGATCCTTTTGGGAATTATCTTGTGCAAAAGCTTTTGGAAGTTTGTAATGAAGACCAAAGGATGCAAATTCTTCATGCAATAACTGGCAAACCAGGAGAGCTTGTCAATATATCACTAAATATGCATGGAACACGTGCAGTACAAAAGTTGATAGAAACACTTGAGACTCCACAACAGGTTTCCATGGTCACGTCCTCTCTTATACCAGGTGTTGTGACCCTCATAAAGGACCTTAATGGTAATCATGTTGTGCAACGTTGCCTGCAGTGCCTTGACAATGAAGACAGTCAGTTTxxxxxxGATGCTGCAGCAGTACATTGTGCTGAGATTGCAACCCATCGACATGGATGCTGTGTGTTGCAACGATGTGTT

Fln Alignment:

Contig19161___EIIDHIIELMTDPFGNYLVQKLLEVCNEDQRMQILHAITGKPGELVNISLNMHGTRAVQKLIETLETPQQVSMVTSSLIPGVVTLIKDLNGNHVVQRCLQCLDNEDSQFLFDAAAVHCAEIATHRHGCCVLQRCV
Q9LM20_______________EVIPHVVELMMDPFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain