SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19135

Length: 1323 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19135

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	membrane-associated progesterone binding protein 4 [Arabidopsis thaliana] gb\|ABD19650.1\| At4g14965 [Arabidopsis thaliana] dbj\|BAF01315.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE83531.1\| membrane-associated progesterone binding protein 4 [Arabid	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	membrane-associated progesterone binding protein 4	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b5	IPR001199	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQZ0

Fln msg: your sequence is longer than subject: 286 - 188

Fln protein: MAAENGTSPPVLRSRSTARNNEGNASSSGSHNEKQEFKLPQNPSVARQILTSPSFLGFLITLILVSIVIHVANKPSMPPRLWAREELAKYNGTDEDLPILLSILGSVFDVTKGRNHYGAGGSYNHFAGRDATRAFISGNFTGDGLTDNVKGLTSTEIKSIIDWRNFYHKSYIYVGKLVGRYYKHNGEPTKELKGVEVKAARGAQLLEKQKAYEDKLTNCNSRWSEQHGGEVWCESGYPRLVQMPSEIALSGKMSKHCACFKEEELNRSGLELYKGCDPYASLCKT*

Protein Length: 287

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCATGTTCGACCACGCTGGACGCGGTACACGTTCGACCAATTTTTCGAATAGTACTAACAAACAAAATCTTACTCTCACGTGGTCAGCAGAAGCACGAGTTCGAGAGCTAACGGGAGAACCTTTGAGCTGAATTTCTCCCGGGAAGCCTCAAATAATCCCTTGGTTCAGCAGCTTGAATTGGAAGAGAGAAAATCCAGAA_-_ATGGCAGCAGAGAACGGCACATCTCCACCCGTTCTTAGATCCCGTTCAACGGCACGCAATAATGAAGGCAATGCATCGTCCTCGGGATCCCATAATGAAAAACAAGAATTCAAATTACCGCAAAACCCTTCCGTAGCCCGACAAATTTTAACATCCCCTTCATTCCTCGGATTTCTCATAACACTTATTCTCGTGTCTATTGTCATCCATGTAGCCAACAAACCCTCAATGCCACCTAGGTTGTGGGCCAGAGAAGAATTGGCCAAGTATAATGGCACGGATGAGGACTTGCCTATTCTGTTGAGCATCCTGGGGAGTGTCTTTGATGTGACTAAAGGAAGAAACCATTATGGAGCAGGAGGGAGTTATAATCACTTTGCTGGCAGGGATGCAACTCGTGCCTTTATTTCAGGAAACTTCACAGGAGATGGTTTAACGGATAATGTGAAAGGCTTAACCAGCACAGAGATAAAAAGCATTATTGATTGGCGCAACTTCTATCATAAAAGTTACATATATGTTGGTAAGCTGGTTGGTCGTTATTATAAACACAATGGAGAACCTACGAAAGAGCTTAAGGGAGTTGAAGTAAAGGCTGCTCGTGGTGCTCAACTTTTGGAAAAACAAAAAGCATATGAAGATAAGCTGACCAATTGCAATTCTAGATGGAGTGAGCAGCATGGCGGAGAGGTGTGGTGTGAATCTGGTTATCCTCGGTTGGTACAAATGCCTTCAGAGATAGCTTTATCAGGGAAAATGAGTAAGCATTGTGCATGCTTCAAAGAGGAAGAACTGAACCGATCAGGGTTGGAGTTGTACAAAGGCTGTGATCCTTATGCATCTTTGTGCAAAACGTAG___AATTGTTACTTATCACATGATCTTGGATTATTGATTCAGGAATATGAAGCGCTGAAATTTATTTATTTTCTTATTCTTTTTTCTTTATGGCGTTTTTCAGTGCGCCTTTAGAAACATTACACAAACTTCAATAATGTCATATTCTCTATACATTCTAGAGTCGAATTGGCTTTTGGATGCAGTATAATCTACTTGCAGAAGACCGTCATGGTTTTAACAAAGTGTACAGTGTATACTT

Fln Alignment:

Contig19135___MAAENGTSPPVLRSRSTARNNEGNASSSGSHNEKQEFKLPQNPSVARQILTSPSFLGFLITLILVSIVIHVANKPSMPPRLWAREELAKYNGTDEDLPILLSILGSVFDVTKGRNHYGAGGSYNHFAGRDATRAFISGNFTGDGLTDNVKGLTSTEIKSIIDWRNFYHKSYI
A9NQZ0_______________MAAENDTHPPVLRSRPTARNNEDKTSSSGSMDEKQEFKLPQNPSVARQIITSSTFLGLLLTLVLVSIVIQVANKPSMPPRLWAREELAKYNGTDEDLPILLSILGSVFDVTKGRNHYGAGGGYNHFAGRDASRAFISGNFTGDGLTDNVKGLTSTEIKSIVDWRNFYHRSYM

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
51	33		66		1.0
175		86	13		0.999973
178	86			13	0.999973
179	86		13		0.999973
181		13		86	0.999973
182	86	13			0.999973
183	86			13	0.999973
185		86	13		0.999973
186		86	13		0.999973
190		13	86		0.999973
191	13		86		0.999973
192		13		86	0.999973
253	40	60			1.0
350	90	10			0.90298
351	90			10	0.90298
352	90			10	0.90298
354		90	10		0.90298
368	83			16	0.994512
370	83		16		0.994512
371	83	16			0.994512
418			25	75	0.996473
632		50		50	1.0
882		50		50	1.0
918		25	75		0.996473
919	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain