SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19118

Length: 610 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene19118 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=A9NVH1_PICSI	-	-	71%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	at1g68530 t26j14_10	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	83%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	83%
Blast2go	cuticle development	GO:0042335	Biological Process	83%
Blast2go	response to light stimulus	GO:0009416	Biological Process	83%
Blast2go	response to cold	GO:0009409	Biological Process	83%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
272		77	22		0.999999
280			77	22	0.999999
281	22		77		0.999999
299	75		25		1.0
302			71	28	1.0
356	42		57		1.0
360		57		42	1.0
361			42	57	1.0
362		42	57		1.0
365	42		57		1.0
368			50	50	1.0
371	40			60	1.0
377	40		60		1.0
409		60	40		1.0
415	40			60	1.0
457		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain