SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19111

Length: 844 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19111

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 46 n=2 Tax=Arabidopsis RepID=F4K6V1_ARATH	-	-	6.0e-16	45%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 46; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	dead-box atp-dependent rna helicase 46	-	-	1.55344e-19	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	1.55344e-19	69%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
25	80		20		0.995493
26		80	20		0.995493
27			20	80	0.995493
28			20	80	0.995493
101	85			14	0.993533
102		85	14		0.993533
103			14	85	0.993533
104		85	14		0.993533
105		85	14		0.993533
432			33	66	1.0
567	62	37			1.0
591		25		75	0.996473
592			75	25	0.996473
594		25	75		0.996473
596		25		75	0.996473
600	33	66			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
406	419	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain