SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19110

Length: 827 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19110

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 family protein [Arabidopsis thaliana] sp\|Q9M9A5.1\|PCR6_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 6; Short=AtPCR6 gb\|AAF69715.1\|AC016041_20 F27J15.18 [Arabidopsis thaliana] gb\|AAR24706.1\| At1g49030 [Arabidopsis thaliana] gb\|AAS47652.1\| At1	-	-	4.0e-29	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	0.0	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
116	57		42		1.0
123	42	57			1.0
222	27		72		1.0
331			88	11	0.923564
351		88	11		0.923564
352		88		11	0.923564
368		88		11	0.923564
369		88		11	0.923564
371	12		87		0.992554
407	14		85		0.993533
423		75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
66	78	CAG CAG CAG CAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain