SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19079

Length: 1908 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB6 n=1 Tax=Picea glauca RepID=A5JYF0_PICGL	-	-	80%
FL-Next	tr=R2R3-MYB transcription factor MYB6; Picea glauca (White spruce) (Pinus glauca).	-	-	90%
Blast2go	myb-related protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5JYF0

Fln msg:

Fln protein: MASMKGKSPSHDEPDRIKGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDATIVRAHAQHGNKWATIARMLSGRTDNAIKNHWNSTLRRRCQGGGALVIDDEISSGADGFRKRNLSEDADASRKFKKLSLGTTTTTTTTEPSTSSASDRSDSSLVFGSPHVYKPVPRPAPLALTSEPNLNLNHHEASCSSTDPPTSLCLSLPGTDAPARPNVVPSALPPPVTSSPVAPPGYIKAEEAMEWMNSAINTTLTQVLTPFLAPARSHGIMPETLGSSGLLAVMQEMVAKEVRDYMSSMQHRNNNNNNTEFRGCVASPPPPPMGLRVSNSNALG*

Protein Length: 359

Fln nts: CTGAGGGTCCGTGCCGCTCGATTCGATGCAACGGCCTGTCGCTGTTGCCAGCACACACGCTGAGAACCTCAGGCCGTCAGGTCAATTTCGGCGCGCCAGCTATGTGGAGGCCAGCCTGGCACAGTCAAACTCAACGCATCGCCACAATGCGCAGTCGACACGTGCCCTCGCCACAGCTATCTGCAGAGCCGGCCTATTGCCAGGAAGAAGCGCCCCACCGAAACCGCCTATGCCGGTCGTCACGACAGGTAGTGCCGGTGATTTCTCAGTCTAGAAAGTCCAGAAGGCCCCTTCCCCCACACAAGTCCCGGCGGGCTCCAAACAATCATGACGAGATGAAATTCCCTTCAGAATGGGATTTCTGAGATTCGATCCTTGATCTGTTGCTGCGATCTGATCGCATTTTATTGGGGGTTTAGGGTTTAAGCTTTTTCTGCTA_-_ATGGCATCGATGAAAGGAAAATCTCCGAGCCACGATGAGCCCGATCGGATCAAGGGGCCTTGGAGCCCCGAGGAGGACGCAGCGCTGCAGCATTTTGTTCAGAAATACGGGCCACGCAACTGGTCCCTGATCAGCAAAGCGATCCCCGGCCGATCTGGCAAGTCCTGCAGGCTCCGATGGTGCAACCAGCTGAGCCCCCAAGTCGAGCACCGCCCCTTCACTCCTGAAGAGGATGCCACTATAGTGAGAGCCCACGCCCAGCATGGCAACAAATGGGCCACGATTGCCCGCATGCTCAGCGGCAGAACCGACAATGCTATCAAGAACCACTGGAACTCCACTCTCAGGAGGCGTTGCCAAGGTGGGGGCGCCCTCGTCATCGACGACGAGATCTCCAGCGGCGCCGACGGGTTTCGAAAGCGGAACCTCAGCGAAGACGCCGATGCCAGCCGGAAATTCAAGAAGCTCAGCCTCGGGACCACGACAACGACCACGACGACGGAGCCTAGCACCTCCTCGGCCTCGGATCGGAGCGACTCTAGTCTGGTATTTGGCTCCCCTCATGTCTATAAACCGGTACCTCGTCCAGCTCCTCTGGCCCTGACTAGCGAACCCAATTTAAATCTAAATCACCACGAGGCCTCCTGTTCGAGCACCGACCCACCGACTTCTCTTTGTCTATCGTTGCCCGGCACTGACGCCCCTGCAAGACCTAACGTTGTCCCCAGTGCCCTGCCCCCGCCTGTCACTTCTTCTCCCGTTGCTCCTCCCGGATACATCAAGGCTGAAGAAGCCATGGAATGGATGAACTCTGCCATAAACACCACATTGACTCAGGTGCTTACCCCTTTTCTAGCCCCAGCTCGTTCACATGGGATAATGCCTGAAACCCTGGGCTCCTCTGGTTTACTGGCAGTAATGCAAGAGATGGTGGCCAAAGAGGTTCGTGATTACATGTCTTCAATGCAGCACCGCAACAACAACAACAACAACACAGAGTTCAGGGGTTGCGTTGCCTCTCCTCCTCCTCCTCCTATGGGATTGCGTGTCTCCAATTCCAATGCCCTGGGTTAA___GCTATATGCCAAGCTGAGACAAAGACTGGAATAGCTGCCAATCAATCAATCCCTTGAGATGGTAATCCATAATTTTCCTTTGCAAAACTTTCCTTCCTTCATTTCAACTCTACAATGAAGGCAATGGCATTAGCTGTGATGTCCTCTGTTATCAACACTTACTTGCCCCAATAATTCTGAAGCAACAGAAACCCAAATTTAATCTTTCCTCTTTTATATGAATCTGAAGGCTATACTATACTATACATATAACTATGCATCTATTTATTGCTTGCTGTTGAGTTATTGCTATAAATCAACTTTTTCTGCAATGCTCATTCATCAAGTATTATTGCTTGCTGTTGAGTTATTGCGACAAATCAACACTCTTTCTACAATGCTCATTCATCAGATTA

Fln Alignment:

Contig19079___MKGKSPSHDEPDRIKGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDATIVRAHAQHGNKWATIARMLSGRTDNAIKNHWNSTLRRRCQGGGALVIDDEISSGADGFRKRNLSEDADASRKFKKLSLGXXXXXXXXEPXXXXXXXXXXXXLVFGSPHVYKPVPRPAPLALTSEPNLNLNHHEASCSSTDPPTSLCLSLPGTDAPARPNXXXXXXXXXXXXXXXXXXGYIKAEEAMEWMNSAINTTLTQVLTPFLAPARSHGIMPETLGSSGLLAVMQEMVAKEVRDYMSSMQHRXXXXXXTEFRGCVASPPPPPMGLRVSNSNALG
A5JYF0_______________MKGKSSGHDEPDRIKGPWSPEEDAALQHFVQKCWPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDATIIRAHAQHGNKWATIARMLSGRTDNAIKNHWNSTLRRRCQGGGALVIDDEITSGADGFRKRSLSEDADASRKLKKLSLGTTATTTTTEPCSSSASDRSDSSLALGSPPVYRPVPRAAPLSLTNEANLNPSHHEASCSSTDPPTSLCLSLPGTDAPARPTVALSALPLPGSSSPLAPPGYIKAEEAMEWMNSAINTTLTQVLSPFVAPARSHGIMPETLGSSGLLAVMQEMVAKEVRDYMSSMQHR--NNNNTEFRGCVAS--PPPMGMRVSNSNALG

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1018	20		80		0.995493
1042			20	80	0.995493
1098	80			20	0.995493
1099		80		20	0.995493
1100		80		20	0.995493
1101		80	20		0.995493
1106	80		20		0.995493
1111	20			80	0.995493
1115		20		80	0.995493
1116	20		80		0.995493
1198		33		66	1.0
1471			10	90	0.90298
1498		6		93	0.999153
1541	86			4	0.999539
1546	92	7			0.999664
1890	25		75		0.996473
1891		66	33		0.997452

SSRs (tot: 4)

Start position	End position	Sequence	Length
1414	1433	CAA CAA CAA CAA CAA CAA CA	20
1458	1474	CTC CTC CTC CTC CTC CT	17
1552	1564	CAAT CAAT CAAT C	13
1744	1759	CTATA CTATA CTATA C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain