SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19029

Length: 401 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene19029
TCGTCAGTGAAAATGCAGAATTCTTGGCAGTAGGCTTAAGTACCAGTGGTAGTGACTGGGTGAACATCAAGGTTATCCGCGTGGCAGATAAAAGTACAGAACCTGATTCTCTTTCATGCGTGAAATCATCATCCGTTACTTGGACTCATGACAACAAAGGTTTCTTTTACAGCCGTTATCCAGCTCCCAAAGAAGGAGAAGGGATAGATGCAGGGACGGAAACGAGTATCAATCTTGATCAGCAACTGTTTTACCATTTCTTGGGCGTTGATCAATCTGAAGATATTCTCTGCTGGAAAGATTCAGAACATCCCAAGTGGAGAGTTAGCTCCGAAATAACTAACGATGGAAAGTATTTTCTTTTATATATTAGAGAAAGCAGTGACCAGGTGAACAGGCTC

Ace file of the UniGene sp_v2.0_unigene19029

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Prolyl oligopeptidase-like protein n=5 Tax=Arabidopsis RepID=F4I2A0_ARATH	-	-	63%
FL-Next	tr=T23E18.7; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	prolyl oligopeptidase-like protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9SGR9

Fln msg: Distance to subject end: 315 aas, your sequence is shorter than subject: 133 - 650

Fln protein: VSENAEFLAVGLSTSGSDWVNIKVIRVADKSTEPDSLSCVKSSSVTWTHDNKGFFYSRYPAPKEGEGIDAGTETSINLDQQLFYHFLGVDQSEDILCWKDSEHPKWRVSSEITNDGKYFLLYIRESSDQVNRL

Protein Length: 134

Fln nts: TCGTCAGTGAAAATGCAGAATTCTTGGCAGTAGGCTTAAGTACCAGTGGTAGTGACTGGGTGAACATCAAGGTTATCCGCGTGGCAGATAAAAGTACAGAACCTGATTCTCTTTCATGCGTGAAATCATCATCCGTTACTTGGACTCATGACAACAAAGGTTTCTTTTACAGCCGTTATCCAGCTCCCAAAGAAGGAGAAGGGATAGATGCAGGGACGGAAACGAGTATCAATCTTGATCAGCAACTGTTTTACCATTTCTTGGGCGTTGATCAATCTGAAGATATTCTCTGCTGGAAAGATTCAGAACATCCCAAGTGGAGAGTTAGCTCCGAAATAACTAACGATGGAAAGTATTTTCTTTTATATATTAGAGAAAGCAGTGACCAGGTGAACAGGCTC

Fln Alignment:

Contig19029___VSENAEFLAVGLSTSGSDWVNIKVIRVADKSTEPDSLSCVKSSSVTWTHDNKGFFYSRYPAPKEGEGIDAGTETSINLDQQLFYHFLGVDQSEDILCWKDSEHPKWRVSSEITNDGKYFLLYIRESSDQVNRL
Q9SGR9_______________VSEDAKYLAYGLSSSGSDWVTIKLMKIEDKKVEPDTLSWVKFTGITWTHDSKGFFYGRYPAPKEGEDIDAGTETNSNLYHELYYHFIGTDQSQDILCWRDNENPKYMFGAEVTDDGKYLIMSIGESCDPVNKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
65		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain