SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene19025

Length: 1065 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene19025

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative nodule-specific protein [Oryza sativa Japonica Group] gb\|ABF99380.1\| nodulin family protein, putative, expressed [Oryza sativa Japonica Group] gb\|EAY92205.1\| hypothetical protein OsI_13924 [Oryza sativa Indica Group]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	uncharacterized protein loc100266758	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Separated hits, possible frame ERROR between 591 and 783, Distance to subject end: 173 aas, your sequence is shorter than subject: 355 - 626

Fln protein: VGIIAGLINEFCPPWVVLTMGSAMNLTGYLMIWLSVTGRVVKPAVWQMYMYQCIGGSSMAFVNTGIIVTCVKNFPRGRGLVIGLLKGFIGLSGAIITQIYRAVSKDEQPSLLIILAATLPTSVVLLLTIFIRPMEAPKEKNETKNLYIFLVMALILAGLLMVFILLENLVVLPQIVIQLFAAITILIIFSPLLIVIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKNISKGKRPQRGEGHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFLGRVGAGFISEILLHKYSIP

Protein Length: 356

Fln nts: GTAGGAATCATTGCTGGTCTCATCAATGAGTTCTGTCCACCATGGGTGGTTCTCACCATGGGTTCGGCGATGAACCTTACTGGATATCTCATGATTTGGCTCTCTGTCACTGGCAGAGTTGTAAAGCCTGCCGTGTGGCAGATGTACATGTATCAATGCATCGGAGGAAGCTCCATGGCATTCGTGAATACTGGAATAATTGTGACTTGTGTCAAGAATTTCCCTAGAGGCAGAGGGTTGGTCATTGGGCTGCTCAAGGGATTTATAGGTCTAAGTGGTGCTATTATTACTCAAATCTATAGGGCTGTCAGTAAGGATGAACAACCCAGTCTTCTCATTATCCTGGCTGCTACTCTCCCCACTTCTGTAGTGCTCCTACTGACGATTTTCATTAGGCCTATGGAGGCTCCGAAAGAGAAGAACGAGACTAAGAATCTTTATATTTTTCTTGTCATGGCCCTCATATTGGCTGGCTTGCTTATGGTATTTATTTTGCTGGAAAACTTGGTGGTTCTTCCACAGATTGTGATTCAGCTGTTTGCTGCAATAACAATTCTGATAATCTTCTCGCCATTGCTGATAGTCATACGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAGAAGAACATTAGTAAAGGCAAAAGGCCTCAAAGAGGTGAAGGCCATACAATTCCTCAAGCATTAATGAGCTTAGACTTGTGGATACTTTTCTTGGCAACGACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAAATTGGAAAATCCTTGCGATACTCCTCTCTGAGTATAAGCACTTTTGTTTCACTTCTGAGCATCTGGAACTTTTTAGGCCGAGTTGGGGCAGGCTTCATCTCCGAAATACTTCTGCACAAGTATTCAATTCCAA

Fln Alignment:

Contig19025___GIIAGLINEFCPPWVVLTMGSAMNLTGYLMIWLSVTGRVVKPAVWQMYMYQCIGGSSMAFVNTGIIVTCVKNFPRGRGLVIGLLKGFIGLSGAIITQIYRAVSKDEQPSLLIILAATLPTSVVLLLTIFIRPM----EAPKEKNETKNLYIFLVMALILAGLLMVFILLENLVVLPQIVIQLFAAITILIIFSPLLIVIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKNISKGKRPQRGEGHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFLGRVGAGFISEILLHKYSIP
B8LRH5_______________GLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFA-SSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLAFDITGKHGI---VLSRTFAGFLLVLLAAPLVVPLKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGF--VDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVP

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
7	66			33	0.997452
548	66		33		0.997452
570		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain