SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18983

Length: 974 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18983

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI	-	-	9.0e-33	57%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	0.0	57%
Blast2go	type-a response regulator	-	-	7.01294e-41	76%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
176		40		60	1.0
363	75	25			0.996473
429	85			14	0.993533
431	85	14			0.993533
433	14		85		0.993533
436	85		14		0.993533
437			14	85	0.993533
536	83	16			0.994512
538	83	16			0.994512
539	83		16		0.994512
542	16		83		0.994512
545	83			16	0.994512
546			83	16	0.994512
549	80	20			0.995493
550	80			20	0.995493
551			20	80	0.995493
555	80	20			0.995493
556			80	20	0.995493
557	80	20			0.995493
573		28		71	1.0
574			28	71	1.0
577		71	28		1.0
578	71			28	1.0
579		71	28		1.0
581		28		71	1.0
582		28		71	1.0
583		71		28	1.0
586			28	71	1.0
587		28		71	1.0
590	71			28	1.0
591		28	71		1.0
595	71	28			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
878	890	TTTC TTTC TTTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain