SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18919

Length: 637 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18919

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Taiwania cryptomerioides RepID=B0L3S3_9CONI	-	-	67%
FL-Next	sp=Pectinesterase; Taiwania cryptomerioides.	-	-	67%
Blast2go	pectinesterase	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
78	40		60		1.0
81			60	40	1.0
83		40	60		1.0
84	60		40		1.0
85		60	40		1.0
87	40			60	1.0
88	40			60	1.0
89		40	60		1.0
92		40		60	1.0
96	60			40	1.0
97		50	50		1.0
99		50	50		1.0
100	50		50		1.0
139		33	66		1.0
156		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
78	40		60		1.0
81			60	40	1.0
83		40	60		1.0
84	60		40		1.0
85		60	40		1.0
87	40			60	1.0
88	40			60	1.0
89		40	60		1.0
92		40		60	1.0
96	60			40	1.0
97		50	50		1.0
99		50	50		1.0
100	50		50		1.0
139		33	66		1.0
156		66		33	1.0

Position	A %	C %	G %	T %	Probability
78	40		60		1.0
81			60	40	1.0
83		40	60		1.0
84	60		40		1.0
85		60	40		1.0
87	40			60	1.0
88	40			60	1.0
89		40	60		1.0
92		40		60	1.0
96	60			40	1.0
97		50	50		1.0
99		50	50		1.0
100	50		50		1.0
139		33	66		1.0
156		66		33	1.0

Position	A %	C %	G %	T %	Probability
78	40		60		1.0
81			60	40	1.0
83		40	60		1.0
84	60		40		1.0
85		60	40		1.0
87	40			60	1.0
88	40			60	1.0
89		40	60		1.0
92		40		60	1.0
96	60			40	1.0
97		50	50		1.0
99		50	50		1.0
100	50		50		1.0
139		33	66		1.0
156		66		33	1.0