SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18891

Length: 1534 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18891

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Papain family cysteine protease n=3 Tax=Arabidopsis RepID=Q8VYS0_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cysteine proteinase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABL3

Fln msg: atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 376 - 403

Fln protein: MAGNNTNPLVLMGCMFLLVISTQISFSLGLDDGTGSENGFIAQVTDKFHGENLLNLCSKTLFDKFIVEHGKVYSTVEEYARRLRIFEKNLLKAAENQALDPTAVHGITPFSDLTEFEFESRYTGLLSVPQGLVNDAPTVNVLPVDDLPANFDWREKGAVTEVKTQGNCGSCWAFSTTGVIEGANFLATGKLLNLSEQQLIDCDHKCDPSNNKACDNGCHGGLMTNAYNYLMEAGGIEEAKNYPYTGIPGDCKFNPDLAAVKVINFTTIPLDEKQIAAHLVKHGPLAVGLNAAFMQTYIGGVSCPLICSKRFINHGVLLVGYGHKGFALLRLGYRPYWIIKNSWGERWGEHGYYKLCRGHGECGMNKMVSAVIPAR*

Protein Length: 377

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTTAATTTTCGCATTCGGAGGC_-_ATGGCGGGGAATAATACCAATCCCCTGGTTTTAATGGGATGCATGTTCTTACTTGTAATTTCCACTCAAATCTCTTTTTCCCTGGGCCTCGACGATGGTACGGGTTCAGAAAACGGGTTCATTGCACAGGTGACTGACAAATTTCATGGCGAAAATCTATTAAATTTGTGCTCAAAGACGCTCTTTGATAAGTTCATCGTTGAGCATGGGAAGGTGTATTCTACTGTAGAAGAATATGCTCGTAGGCTGCGGATATTCGAAAAGAATTTACTCAAGGCAGCCGAGAACCAAGCCTTAGATCCCACGGCCGTGCACGGCATTACTCCCTTCTCGGATCTAACGGAGTTCGAGTTCGAATCTCGTTACACAGGACTTCTCAGCGTTCCACAGGGTTTAGTGAACGACGCCCCGACGGTCAATGTTTTGCCGGTCGACGATCTGCCTGCCAATTTTGACTGGAGGGAAAAAGGCGCTGTGACAGAGGTGAAGACGCAGGGCAACTGCGGTTCTTGCTGGGCATTCAGCACTACAGGAGTTATTGAAGGAGCAAACTTTCTTGCCACTGGAAAGCTTCTTAACCTCAGCGAGCAGCAGCTCATAGACTGCGATCACAAGTGTGATCCTTCGAATAACAAAGCTTGTGATAATGGCTGCCATGGGGGCTTAATGACCAATGCATACAATTACCTAATGGAAGCTGGAGGCATAGAGGAAGCGAAAAACTATCCATACACTGGGATTCCAGGAGATTGTAAGTTCAACCCTGATTTGGCAGCTGTTAAAGTTATAAATTTCACTACCATTCCTCTTGACGAGAAGCAAATTGCAGCTCACCTTGTGAAGCACGGACCTTTGGCCGTTGGACTTAATGCAGCTTTCATGCAAACATATATTGGGGGCGTCTCCTGTCCTCTAATTTGTAGCAAGAGATTTATAAACCATGGAGTGTTGCTGGTGGGGTATGGACATAAAGGATTCGCACTGCTGAGATTGGGGTATAGACCTTACTGGATCATCAAGAACTCGTGGGGTGAACGATGGGGAGAGCACGGTTATTACAAGCTTTGTCGTGGGCATGGTGAATGTGGAATGAACAAAATGGTATCTGCTGTGATACCAGCAAGGTGA___AAACAGATAAAGTTCTGGCACATCATGTTCGATGTGCAGCTGTAGAGTTTTATATATCCCTCTGTTAAAATTACGTTGCATTATCTGTTGGCTATTACGTTCAATAGCGCCTTAAACTATTTCAGTCTTTATGCCATCCCATGAAGATGTAGATGTATTTGTATATTTGTGTACACCATATACACTTAATATTTTTGTACACCGTTACTATTAGATTTTGACGGTTTTGATGGTTTTGATGTCTTTAGATAGTGGCTATGTTAAAAAAATTAATGTAATCATGATTAGGATTGGGGATTGGTGTGGCTGGTTGATCCGATTCAGGTCGGATACGATTTCAAGTGATTTACATCGATATAA

Fln Alignment:

Contig18891___IFAFGGMAGNNTNPLVLMGCMFLLVISTQISFSLGLDDGTGSENGFIAQVTDKFHGENLLNLCSKTLFDKFIVEHGKVYSTVEEYARRLRIFEKNLLKAAENQALDPTAVHGITPFSDLTEFEFESRYTGLLSVPQGLVNDAPTVNVLPVDDLPANFDWREKGAVTEVKTQGNCGSCWAFSTTGVIEGANFLATGKLLNLSEQQLIDCDHKCDPSNNKACDNGCHGGLMTNAYNYLMEAGGIEEAKNYPYTGIPGDCKFNPDLAAVKVINFTTIPLDEKQIAAHLVKHGPLAVGLNAAFMQTYIGGVSCPLICSKRFINHGVLLVGYGHKGFALLRLGYRPYWIIKNSWGERWGEHGYYKLCRGHGECGMNKMVSAVIPAR
D5ABL3_______________ILIISSMAGYNTNLLVLAGCMFLLVISTQISFSLGLDNGRVSEGGFIAQVTEKFNREHLLNLRSKTLFDKFIVEHGKVYSTIEEYVRRLRIFEKNLLKAAENQALDPTAVHGITPFSDLTEYEFESRYTGLLGVRQGLVNEKQTAEILPVDDLPANFDWREKGAVTEVKTQGNCGSCWAFSTTGVVEGANFLATGKLLNLSEQQLIDCDHKCDPLNTKACDNGCHGGLMTNAYNYLMEAGGIEEAKNYPYTGVQGDCKFNPDLAAVKAINFTTVNLDEKQIAANLVKHGPLAVGLNAAFMQTYIGGVSCPLICSKRFINHGVLLVGYGHKGFALLRLGYRPYWIIKNSWGKRWGEHGYYKLCRGHGECGMNKMVSAVIPAR

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
24	33	66			0.997452
53		25	75		0.996473
55			75	25	0.996473
56	75		25		0.996473
58		25		75	0.996473
59	75	25			0.996473
60	75			25	0.996473
62	75		25		0.996473
63		75	25		0.996473
65	75			25	0.996473
66	75		25		0.996473
70		75		25	0.996473
72	25			75	0.996473
167	88		11		0.923564
169		11		88	0.923564
171		88	11		0.923564
175		11	88		0.923564
176			88	11	0.923564
179	88		11		0.923564
183	88			11	0.923564
188		11		88	0.923564
190		11		88	0.923564
191	11	88			0.923564
210	89	10			0.999919
442	88	11			0.923564
444		11		88	0.923564
548			16	83	0.994512
549			83	16	0.994512
553	16			83	0.994512
554		16		83	0.994512
563			83	16	0.994512
566		16		83	0.994512
574			33	66	1.0
575	66			33	1.0
577	66		33		1.0
578			66	33	1.0
581		33	66		1.0
582		22		77	0.999999
584	66		11		0.999999
585		11		88	0.923564
586			22	77	0.999999
588	66	33			1.0
589	77			22	0.999999
590		11	88		0.923564
592		33	66		1.0
594	11	22			0.999999
595			77	22	0.999999
711		85		14	0.993533
803	72	27			1.0
807			27	72	1.0
808		72		27	1.0
809	72		27		1.0
813		72		27	1.0
817			27	72	1.0
818		27		72	1.0
821			72	27	1.0
824			72	27	1.0
904			10	90	0.90298
906		10		90	0.90298
909	10	90			0.90298
911		10	90		0.90298
920	87	12			0.999964
961	11			88	0.999952
965		82	5		0.999919
967	82	5			0.999919
968	82	5	11		0.999919
969			11	88	0.999952
970		11		88	0.999952
974	82	11		5	0.999919
975	11		88		0.999952
977	82	5			0.999919
978	88			11	0.999952
979		17	82		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain