SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18868

Length: 1123 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18868

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	thioredoxin-like 4 [Arabidopsis thaliana] gb\|AEE28165.1\| thioredoxin-like 4 [Arabidopsis thaliana]	-	-	8.99999e-40	76%
FL-Next	Isoform 2 of Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700	-	-	0.0	41%
Blast2go	thioredoxin-like 4	-	-	2.78858e-43	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.78858e-43	88%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C5C5-2

Fln msg: Overlapping hits, possible frame ERROR between 797 and 794,

Fln protein: MNVCCSSQMLNAKITWKYSRFRAVDMLPSLRLVQVENHSFKIKKTSGRVKTCAALNAAEYRRMKAESQVKLPDYEEDEDLCPVDCVKEFRTDAELEEILETTKKTGSLVVVxxxRTACGSCKYIEQGFIKLCKGAGDKEASVIFLKHNVMDEYEEQSEVAERLKIKVVPLFHFYKDGKLVDAFPTRDKNKLIAAICKHTSKSVE*

Protein Length: 206

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACATTTAGAACTTGATAGACGTTAAAATAATTTCTTTCGAGATAACTACATTTTCGACACTTTGGATTAACAGAACGAATAATAAACACACTGAGCATGAATGTTGTAAATATCAATCATGACGGCCATTTACCCGGTATTAAATCGACAGCAGATTACAGCATGACTTATTTAGAAATCTAGTAATTATGCACTAATCTTCCGAAAATGTCAACACACAAGGTCTCTTTGGCGGACCTGGGCTTCTCAGGCGCGGAGAATGGTGGTTGGCAATTCATAGCATGCACCATAGGTTTGCTTTGGGCTTTATTAAAAATCAAAACTTGCTCGGCAAGAGGCATTTCTGAGGAAGGGAACTATTATAGCCTCTTCAGCAGCTGTGACCCAGGAACACTCGCTCTGCATTTCAAGTTGATCAGTTGTGTACAAAAAC_-_ATGAATGTGTGTTGTTCATCTCAAATGTTGAATGCAAAAATCACGTGGAAGTACTCTCGGTTTAGAGCAGTTGATATGTTGCCAAGTCTGAGACTTGTACAAGTTGAGAATCATTCTTTCAAGATAAAGAAAACGTCAGGCAGGGTAAAAACATGTGCAGCCCTTAATGCGGCAGAGTATAGGAGGATGAAGGCTGAAAGTCAAGTAAAATTACCTGATTATGAGGAGGATGAGGATCTGTGTCCCGTAGATTGTGTGAAAGAATTCAGGACCGATGCAGAATTGGAAGAAATCCTTGAGACAACCAAGAAGACAGGTTCTCTGGTAGTGGTGxxxxxxxxxCGAACAGCTTGTGGAAGTTGTAAGTATATCGAGCAGGGCTTCATAAAATTGTGCAAAGGAGCTGGTGACAAGGAAGCATCAGTCATCTTCTTGAAACACAATGTCATGGATGAATATGAGGAGCAGTCAGAAGTGGCTGAACGCTTAAAAATCAAGGTAGTGCCACTCTTTCACTTTTACAAGGATGGAAAATTGGTGGATGCATTTCCTACCAGAGATAAGAATAAACTCATTGCAGCTATTTGTAAACATACCTCAAAGAGTGTTGAATAG___AAAAAAATCTGATGTATATATTCTTGTAATAATTATTTTTGAGTTTGGTAT

Fln Alignment:

Contig18868___VENH-----------SFKIKKTSGRVKTCAALNAAEYRRMKAESQVKLPDYEEDEDLCPVDCVKEFRTDAXXXXXXXXXXXXGSLVVVDxYRTACGSCKYIEQGFIKLCKGAGDKEASVIFLKHNVMDEYEEQSEVAERLKIKVVPLFHFYKDGKLVDAFPTRDKNKLIAAICKHTS
Q9C5C5-2_____________VENHRWVWHNNGVRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSD--ENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDxYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
89		12	87		0.992554
90	12		87		0.992554
94	87	12			0.992554
123			12	87	0.992554
249			14	85	0.993533
296		80	20		0.995493
823	25			75	0.996473
824	75	25			0.996473
826			75	25	0.996473
883	60	40			1.0
887	60		40		1.0
889		60	40		1.0
890	40			60	1.0
891		40		60	1.0
896	60		40		1.0
897	60	40			1.0
898	60			40	1.0
899		60	40		1.0
900	60			40	1.0
903	60	40			1.0
906		40		60	1.0
907	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain