SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18844

Length: 431 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene18844
CGTCGTGACCTTGGCTGCACTCATGTTCTGAACATCAACACCATCATCTATGGGCTGAATCATCTTTTCACGCATCCAAACCATGAAGATCCTCTGAACCATGATGCTGCGGCAGTCTTGAGAGATAACCCTAGGGCATTTGAAACACGTCGTGACCTTGGCTGTCACTCAGTTATGTGGGATCTAGCTATTTCTCAAGATGTATTTGACGCTCCTTGATATTTTAATAAAGATTTATAATGTAATTCTAAAAGGATGCCAGCCCGGTTTGCATCATAAGCTTTTTTGGGAGCAGTTCTTAATTTCACAACTTGGATTGAACAGATATTTGCAAATTTCATTGTTCTTGAAACTATTTTCATTGACAAGATTGTGGTTTGGCAGGAGAGGTTTCTGTCTATGTAATTTAGGGTAGCAGTTCGTTTAAATTT

Ace file of the UniGene sp_v2.0_unigene18844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Picea sitchensis RepID=B8LMJ5_PICSI	-	-	1.0e-18	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	nedd8-conjugating enzyme ubc12	-	-	2.47571e-20	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	2.47571e-20	92%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	2.47571e-20	92%
Blast2go		GO:0051605	Biological Process	2.47571e-20	92%
Blast2go	CAAX-box protein maturation	GO:0080120	Biological Process	2.47571e-20	92%
Blast2go	cellular protein localization	GO:0034613	Biological Process	2.47571e-20	92%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	2.47571e-20	92%
Blast2go	protein binding	GO:0005515	Molecular Function	2.47571e-20	92%
Blast2go	small conjugating protein ligase activity	GO:0019787	Molecular Function	2.47571e-20	92%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	2.47571e-20	92%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015580	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ5

Fln msg: your sequence is shorter than subject: 73 - 183

Fln protein: RRDLGCTHVLNINTIIYGLNHLFTHPNHEDPLNHDAAAVLRDNPRAFETRRDLGCHSVMWDLAISQDVFDAP*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGCACTCATGTTCTGAACATCAACACCATCATCTATGGGCTGAATCATCTTTTCACGCATCCAAACCATGAAGATCCTCTGAACCATGATGCTGCGGCAGTCTTGAGAGATAACCCTAGGGCATTTGAAACACGTCGTGACCTTGGCTGTCACTCAGTTATGTGGGATCTAGCTATTTCTCAAGATGTATTTGACGCTCCTTGA___TATTTTAATAAAGATTTATAATGTAATTCTAAAAGGATGCCAGCCCGGTTTGCATCATAAGCTTTTTTGGGAGCAGTTCTTAATTTCACAACTTGGATTGAACAGATATTTGCAAATTTCATTGTTCTTGAAACTATTTTCATTGACAAGATTGTGGTTTGGCAGGAGAGGTTTCTGTCTATGTAATTTAGGGTAGCAGTTCGTTTAAATTT

Fln Alignment:

Contig18844___VLNINTIIYGLNHLFTHPNHEDPLNHDAAAVLRDNPRAFET
B8LMJ5_______________VLNINTIIYGLNHLFSHPNHEDPLNHDAAAVLRDNPRAFET

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
148	20	80			0.995493
149	20		80		0.995493
154	20		80		0.995493
156		80	20		0.995493
157	20	80			0.995493
158	20			80	0.995493
159			20	80	0.995493
165			20	80	0.995493
168		80	20		0.995493
169			20	80	0.995493
170		80	20		0.995493
171	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain