SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18679

Length: 836 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18679

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VQ motif-containing protein [Arabidopsis thaliana] gb\|AAG51088.1\|AC027032_8 hypothetical protein [Arabidopsis thaliana] gb\|AEE31830.1\| VQ motif-containing protein [Arabidopsis thaliana]	-	-	1.0e-11	40%
FL-Next	tr=Putative uncharacterized protein F10O5.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	vq motif-containing protein	-	-	1.70466e-12	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	VQ	IPR008889	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
349	90			10	0.90298
350	90		10		0.90298
353	90	10			0.90298
357			10	90	0.90298
359	90		10		0.90298
361	90	10			0.90298
366		10		90	0.90298
422		14		85	0.993533
433		20		80	0.999996
434	80		20		0.999996
436		20		80	0.999996
437	80		20		0.999996
440	20		80		0.999996
441		20	80		0.999996
445		80	20		0.999996
446	80		20		0.999996
447		20	80		0.999996
448	80			20	0.999996
452	20	80			0.999996
458	20	80			0.999996
603	76	23			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
513	525	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain