SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18678

Length: 377 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene18678
ATGGGATCAGTGATCAGTTCCCAAAAGGGAGGGAAGTTTCTGATTGACATGGGTAATGGACGGTCAGGATGTTCATCCCTCAATTCTCCTGTTGCAAGTCCTCAAAGCAGTGGAGATTTTTCTTTCAGCCAGTTCCCCTATCCTGTTTATAAAGGCTTTGTGATGAGTTCTACTGTTCAGGGAGAACGTCAATGCAGCAAGCCCGTTGTACAAATAGCCATGAGACATGTTAATTGTATGGAAGATGCTGCAGTCTTTGTGGCTTTGGCAGCAGCAGTAGATCTGAGCATGGATGCTTGCCAGCTATTCTCACGGACGCTGAGAAAGGAACTGTGTCAGGAAGATGGGATTTTTAGTTGTGTCAGACGTTGTATAAA

Ace file of the UniGene sp_v2.0_unigene18678 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1005 domain containing protein	-	-	4.00001e-41	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Blast2go	uncharacterized protein	-	-	1.59333e-35	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5AE90

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 125 - 457

Fln protein: MGSVISSQKGGKFLIDMGNGRSGCSSLNSPVASPQSSGDFSFSQFPYPVYKGFVMSSTVQGERQCSKPVVQIAMRHVNCMEDAAVFVALAAAVDLSMDACQLFSRTLRKELCQEDGIFSCVRRCI

Protein Length: 126

Fln nts: ATGGGATCAGTGATCAGTTCCCAAAAGGGAGGGAAGTTTCTGATTGACATGGGTAATGGACGGTCAGGATGTTCATCCCTCAATTCTCCTGTTGCAAGTCCTCAAAGCAGTGGAGATTTTTCTTTCAGCCAGTTCCCCTATCCTGTTTATAAAGGCTTTGTGATGAGTTCTACTGTTCAGGGAGAACGTCAATGCAGCAAGCCCGTTGTACAAATAGCCATGAGACATGTTAATTGTATGGAAGATGCTGCAGTCTTTGTGGCTTTGGCAGCAGCAGTAGATCTGAGCATGGATGCTTGCCAGCTATTCTCACGGACGCTGAGAAAGGAACTGTGTCAGGAAGATGGGATTTTTAGTTGTGTCAGACGTTGTATAAA

Fln Alignment:

Contig18678___SVISSQKGGKFLIDMG---NGRSGCSSLNSPVASPQSSGDFSFSQFPYPVYKGFVMSSTVQGERQCSKPVVQIAMRHVNCMEDXXXXXXXXXXVDLSMDACQLFSRTLRKELC--QEDGIFSCVR
A5AE90_______________STLGSNKGGKFVIDLGGGSNGRATPGSATSPACSPRSSGDFGYGLWPYCSYRGFVMSATVEGEGKCSKPSVEISVQHVNCTEDAAAFVALAAAVDLSMDACRLFSHKLRKELCVWQQDRILICAR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
104	25		75		0.996473
150		75		25	0.996473
151	75		25		0.996473
152	25			75	0.996473
155		75	25		0.996473
156	25			75	0.996473
161		25	75		0.996473
163	25			50	0.995533
165			25	75	0.996473
166			25	75	0.996473
168		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain