SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18648

Length: 1692 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18648

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative fasciclin-like arabinogalactan protein 20 [Arabidopsis thaliana] sp\|Q9FGW0.1\|FLA20_ARATH RecName: Full=Putative fasciclin-like arabinogalactan protein 20 dbj\|BAB10524.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED94617.1\| putative fasci	-	-	1.0e-07	23%
FL-Next	sp=Fasciclin-like arabinogalactan protein 21; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%
Blast2go	fasciclin-like arabinogalactan protein	-	-	7.00649e-45	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FL53

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 55 aas, your sequence is longer than subject: 396 - 353

Fln protein: MEYGRLVLYLITAMAIFCYAGAVDESSIVHFQDPQDQEEFVQILRNMGFTSLATQLQSSQDLLVGRKGPLTIFAPTEEALRNFNSPNSSPEKSSADYLLSHHIAKGLFTYADLQKLPNGTNLEAIAAHCSLVVTGNSSGDGRQDSISPSTRMPAEYHPVYINGVLVSHPDILNDGLLAIHGVDKLLLDLDLDHSNYDTTTGAPVPAMMSPSPSSSASPGPDHPLNVITPFMLQDAALSLRDRGYSILALAMRIKSPELLRLQNLTIFTLSDDSVFSSEGQEFSNNVRYHVVPNMRLPLADLVRLPAGTRLKTLLHGQSLVVSDSKPFSVNYVGIKIADVFSNRWIVVHEILRPLISSVDPMEWASSDSSEILRSLLMSSEDQMGFYRNNGTGDHQ*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGCTGTCACTTGGAGAACTGTCTCTTTCAATAACAGATTAACTGATCAAGAATTTGCATAGAAACAGCCCACGGGCTATATAACACACCTTCGTGCCTTTGCTGCCCTCATATCTCTGGTAAACCTCCCTTCAATTATCGTCTCTTCTCATTAATCCAGTTATTCTCGTGCCTTGGAACATTAGTTGCCTTTTGCCGTGCAGAGCAAAGCTTAGGCCGTCTGAGCTTATTTTCGATCTTTGAATTTACAGTGCTGGACG_-_ATGGAGTATGGGCGCTTAGTTTTGTATCTGATTACTGCTATGGCGATCTTCTGTTATGCGGGTGCAGTGGATGAATCTTCAATTGTTCATTTCCAGGATCCCCAGGATCAAGAAGAGTTCGTGCAGATTCTCCGCAACATGGGTTTCACTTCTCTGGCCACGCAATTGCAGTCTTCCCAAGATCTTCTGGTGGGACGGAAGGGCCCCCTCACTATCTTTGCTCCCACAGAAGAAGCATTACGCAATTTTAATTCCCCCAATTCCTCCCCTGAAAAATCTTCAGCAGATTATCTCCTCTCCCATCACATCGCCAAGGGCCTCTTCACCTACGCCGATCTGCAAAAGCTGCCCAACGGAACAAACCTGGAAGCCATTGCCGCCCACTGCAGCCTCGTCGTCACAGGTAATTCTAGCGGAGATGGCCGCCAAGATTCCATCTCTCCCTCCACTCGGATGCCGGCCGAGTATCATCCAGTGTACATTAATGGAGTTCTTGTCTCGCATCCTGACATTCTCAATGACGGGCTGTTAGCGATCCATGGCGTGGACAAGCTGCTTCTTGATCTTGATCTTGATCACAGTAATTATGACACAACTACTGGAGCACCTGTTCCTGCAATGATGTCACCATCACCATCATCATCAGCTAGTCCTGGTCCTGATCATCCTCTGAATGTCATAACGCCCTTCATGCTCCAAGATGCAGCGCTGAGTCTGAGAGATCGGGGTTACAGCATCCTCGCCTTGGCCATGCGCATCAAGTCCCCTGAGCTTCTGCGCCTGCAAAACCTCACCATCTTTACTCTCAGCGACGATTCCGTTTTCTCAAGCGAAGGCCAAGAATTTTCAAACAATGTGAGGTACCATGTGGTTCCCAACATGAGGTTGCCATTGGCAGATCTGGTGCGGCTTCCGGCAGGCACAAGACTGAAGACTCTCCTCCACGGGCAATCGCTGGTTGTGAGCGACAGCAAACCCTTCTCTGTCAATTATGTGGGTATAAAGATTGCCGATGTTTTCAGCAACAGATGGATAGTCGTGCATGAGATTCTTCGGCCGCTCATAAGCTCTGTGGATCCGATGGAGTGGGCTTCCAGCGACAGCAGCGAGATTCTTCGGTCCCTCTTGATGAGCTCAGAGGATCAGATGGGGTTTTACAGAAACAACGGCACTGGTGATCATCAGTAGTAGTAGGTCAATAAGGGACTTAAGATTCTTTTATTTTAGTTGCTCTCTGTATGTAATTGTGATGTATCTTGCATTTGTATTTTGAGTACAGTGGTATCCATGAGAAATCATATCAGGGAAGGTAGCAATGAATGTCTATGAATGCAGCATGTTATGTTCCTCTATCAAGAAGCCACATTTTGCTTGGACTGTAATGGAACAATGGCAATTTATATAATGGTTCTGATTCTTGT

Fln Alignment:

Contig18648___TPFMLQDAALSLRDRGYSILALAMRIKSPELLRLQ--NLTIFTLSDDSVFSSEGQE---FSNNVRYHVVPNMRLPLADLVRLPAGTRLKTLLHGQSLVVS----DSKPFSVNYVGIKIADVFSNRWIVVHEILRP
Q9FL53_______________SPSLSLNASNTLRQSNFKAIATLLHI-SPEIFLSSSPNTTLFAIEDASFFNTSSLHPLFLKQLLHYHTLPLM-LSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
19		66		33	0.997452
53	66		33		0.997452
102			50	50	1.0
103	50			50	1.0
105	50		50		1.0
106	50			50	1.0
111			50	50	1.0
113			50	50	1.0
114		50	50		1.0
116		50		50	1.0
120	50	50			1.0
852		66	33		0.997452
1061	85		5		0.999793
1339	96		3		0.988939
1371		96		4	0.99411
1662	90		9		1.0
1693	20		40	40	1.0
1694	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
829	848	TCTTGA TCTTGA TCTTGA TC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain