SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18635

Length: 917 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene18635 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-ketoacyl-ACP synthetase I-2 [Glycine max]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	3-oxoacyl-synthase i	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABC3

Fln msg: your sequence is shorter than subject: 280 - 481

Fln protein: IPYSITNMGSALLAIDTGFMGPTYSISTACATANYCLHAAANHIRRGEADIMLAGGTEASILPSGVGGFIACKALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHARKRGAPIIAEYLGGAVSCDAYHMTNPRPDGHGVSICIRKCLEDAGVSPEEVNYINAHATSTQTGDLTEVTAIKNTFKDTSSIKMNGTKSMIGHCLGAASALEAIATIKAITTGWLHPTINQFNIEPNVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP*

Protein Length: 281

Fln nts: ATTCCTTATTCCATCACGAACATGGGATCTGCATTGTTGGCAATTGATACGGGATTTATGGGCCCGACCTACTCAATTTCAACCGCATGTGCAACAGCAAATTACTGTCTACATGCAGCTGCAAATCATATTCGCAGAGGTGAAGCAGATATCATGCTTGCAGGTGGCACAGAAGCTTCCATTTTGCCGTCTGGTGTAGGTGGATTTATCGCTTGTAAGGCCCTTTCACAGAGGAATGACGACCCACAGACAGCTTCCAGACCGTGGGACAAGGATCGTGATGGCTTTGTCATGGGTGAAGGTGCTGGCGTGCTGGTTATGGAAAGTCTTGAGCATGCAAGGAAGCGAGGAGCCCCCATAATAGCCGAGTACCTCGGTGGAGCTGTCAGTTGTGATGCTTATCACATGACGAATCCACGTCCTGATGGGCATGGAGTTTCAATCTGCATTCGGAAATGCCTGGAAGATGCAGGAGTTTCACCAGAGGAGGTCAATTATATCAATGCTCATGCAACATCGACCCAGACAGGAGATCTCACAGAGGTTACAGCTATCAAGAACACTTTCAAGGATACTTCTAGCATCAAAATGAATGGAACAAAGTCTATGATTGGGCATTGTCTTGGAGCTGCTAGTGCATTGGAAGCAATTGCAACTATAAAGGCTATCACTACTGGGTGGCTTCACCCTACAATTAATCAATTTAATATCGAGCCTAATGTTACAATTGATACAGTGCCAAATATAAAGAAGCAACATGAAGTGCATGTTGGTATCTCAAACTCGTTTGGATTTGGTGGGCACAACTCAGTGGTAGCTTTTGCTCCATTCAATCCTTAA___CAAGCTATCTACATTATTTTCTCAAAATAGCTGTTTTTCTATTGAATTCCCATAAATTGATGCAATGTAGTAATCTT

Fln Alignment:

Contig18635___IPYSITNMGSALLAIDTGFMGPTYSISTACATANYCLHAAANHIRRGEADIMLAGGTEASILPSGVGGFIACKALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHARKRGAPIIAEYLGGAVSCDAYHMTNPRPDGHGVSICIRKCLEDAGVSPEEVNYINAHATSTQTGDLTEVTAIKNTFKDTSSIKMNGTKSMIGHCLGAASALEAIATIKAITTGWLHPTINQFNIEPNVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP
D5ABC3_______________IPYTISNMGSALLAIDTGLMGPNYSISTACATANYCLYAAANHIRRGEADIMLAGGTEAGIVPVSVGGFIALRALSHRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVTCDAHHMTDPRSDGLGVSMCIRKSLEDAGVSPEEVNYINAHATSTRAGDLAEVNAIKKVFTNTSSIKMNGTKSMIGHSFGAAGALEAIATIKAITTGWLHPTINQFNTEPDVTIDTVPNVKKQHEVHVGISNSFGFGGHNSVVTFAPFNP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
499		88		11	0.923564
529		77	11	11	0.968132
533		88		11	0.923564
537		11		88	0.923564
564	16		83		0.994512
615	80		20		0.995493
626		20		80	0.995493
633		20	80		0.995493
645		80		20	0.995493
646		20		80	0.995493
654		80		20	0.995493
670		20		80	0.995493
678	20		80		0.995493
699	20	80			0.995493
708	20		80		0.995493
715		80	20		0.995493
716		80		20	0.995493
756		25		75	0.996473
813	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain