SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18629

Length: 878 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MFT-like protein (Fragment) n=8 Tax=Picea RepID=D5JDB1_9CONI	-	-	98%
FL-Next	tr=MFT2-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	98%
Blast2go	mft-like protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	87%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylethanolamine-binding, conserved site	IPR001858	-	0.0	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
237		27		72	1.0
239		72	27		1.0
242		27	72		1.0
243		72	9		0.999994
409		75		25	1.0
410			75	25	1.0
411	75	25			1.0
423		12	87		0.992554
425		12	75		0.975346
426	87	12			0.992554
427	87			12	0.992554
438	12		87		0.992554
457	87		12		0.992554
511			80	20	0.999996
513		77	22		0.999999
514		77		22	0.999999
515		77	22		0.999999
516	22	77			0.999999
518	77	22			0.999999
524	77			22	0.999999
525			22	77	0.999999
526		77		22	0.999999
530	77			22	0.999999
531		22	77		0.999999
574	30			70	1.0
736	40			60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
158	173	TAA TAA TAA TAA TAA T	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain