SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18591

Length: 800 nt

Origin of reads: Inia v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18591

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] gb\|AAK48978.1\|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gb\|AAL06554.1\|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] gb\|AAC28253.1\| RNA polymerase I	-	-	1.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	rna polymerase ii and iii kda subunit	-	-	1.71185e-36	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.71185e-36	70%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	1.71185e-36	70%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	1.71185e-36	70%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, subunit H/Rpb5 C-terminal	IPR000783	-	-
Sma3	RNA polymerase, Rpb5, N-terminal	IPR005571	-	-
Sma3	DNA-directed RNA polymerase, RPB5 subunit	IPR014381	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
234	80	20			0.995493
236		80		20	0.995493
242	80	20			0.995493
243			80	20	0.995493
246	80	20			0.995493
368	75	25			0.996473
369	75		25		0.996473
372		75		25	0.996473
387	75			25	0.996473
388		25	75		0.996473
389	25			75	0.996473
437	80			20	0.995493
438		20		80	0.995493
444		20	80		0.995493
445	80			20	0.995493
447	80		20		0.995493
448		80	20		0.995493
449		20		80	0.995493
453			80	20	0.995493
457		20	80		0.995493
458	85	14			0.993533
460	85			14	0.993533
465	14		85		0.993533
467	85	14			0.993533
468	85			14	0.993533
469	85			14	0.993533
471			14	85	0.993533
475		14	85		0.993533
477	85	14			0.993533
478			85	14	0.993533
480	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain