SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18560

Length: 2056 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene18560
CGTCGTGACCTTGGCTGTCACTCATTTCCACACTTTGCTTCGTCCTTAAGACATCATGGATCAATCAGTCCATCAGAATATATACGTCGTGACCTTGGCTGTCACTCAATTATCGATCTACAAAAATATGGCGGAAGCAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGTCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAATTGGAATCCGAGGAGGAGGAGGAGGAGGAATTGGGGGATTCAGCACCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGCTCTCAACTCCACCTCTCTGCATCATCGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAAATTGTGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCTCTTGATCAACTTCAACATGATGACAAGCAGGCCGCATTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCTATTACTCCCTCCGATTTGCAGCATATATCTCCTCCCTTTCCTCCCGGAGGTGGTGGTCCTCCTCCACCGCCTGGACGAGGGCATCCACCTCCTCCTGCAGGTGGGCCTCAAGGTTCCAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCGTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATGGCGCAATCCGCGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGAAATGGTTGAATTCCAAGGCGCCTGCATCTGTTCTCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCTTGGACTGGAAGCTGCGCAGAAGCCATTCATTTGGGTCTTACAGGATCACCATGATCGTCCTCCCCCTCCTGATCATCCTCCCTGTGATCAGGGTAATAGTGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAATCGAGGGACTGGGTTTGATCGTTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCACCCTTCCACTGGAGGATTTCTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATCGGCTACGGTGTTCCCATCTTGGCATGGCCCATCAGAGGAGATCAGCACTACAATGCCAAATTGCTCGTCAAGGACCTCCAGATTGCGGCCATGATCGACAAGCCAACACAGAATGGGCTTGTGAGCAGGAAGGAAATTGGACATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAGCCCAGTTAAGAGAAAGAGCAGACTCTCTGAAACTCAAGTTCCGCACTACCTGTCTCTTATCCTCCCAAGCCGTGTTAGACACTTTTCTTGATTACCTTTTACCGAAGCAGTCCGAAACTGTTGGAATGAATGTCAGCTTGAAAGTACAGGATCTGGGCGAATAATGAAATGGGATAAGGGGCCCATTAATCCAGCTTTTACTAAAAATGTTATCCGATGCTTTTTATTAATGCAAAGGTTTTGTGTTGTGGGGTGTGCATCTTACTGTCTTATGTTTCACGGGATCCGGCATTGACATGATACTGTTATGAACTATAACCACAAATTGGTTTATTTGAAGACGATAATACTTCCATCATGCTTTTTAGGATAGAATATAATCATTCAATCTGGCAAAAATTGGGACTTCTAAAATGCTGCAAATGTGGCAACA

Ace file of the UniGene sp_v2.0_unigene18560

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glycosyltransferase 73B4 [Arabidopsis thaliana] sp\|Q7Y232.1\|U73B4_ARATH RecName: Full=UDP-glycosyltransferase 73B4; AltName: Full=Flavonol 3-O-glucosyltransferase UGT73B4 gb\|AAP37678.1\| At2g15490 [Arabidopsis thaliana] dbj\|BAE99671.1\| putative glucosy	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	cis-zeatin o-glucosyltransferase	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3		IPR013084	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPW1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 318 aas, putative chimeric sequence, your sequence is shorter than subject: 184 - 502

Fln protein: MDQSVHQNIYVVTLAVTQLSIYKNMAEAGAEIVAIPFNGQGHVFPCIELCKRLAARGLHITIIADSSVSATLRTVADQSSSSGLRITFIELESEEEEEEELGDSAPHPDHHGHDHMEQQQQKAMEEILQKKLSTPPLCIIGDVMMGWVPELCKKLWYSQSLVLHFWGLFFGLRICNLEAPKLS*

Protein Length: 185

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCACACTTTGCTTCGTCCTTAAGACATC_-_ATGGATCAATCAGTCCATCAGAATATATACGTCGTGACCTTGGCTGTCACTCAATTATCGATCTACAAAAATATGGCGGAAGCAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGTCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAATTGGAATCCGAGGAGGAGGAGGAGGAGGAATTGGGGGATTCAGCACCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGCTCTCAACTCCACCTCTCTGCATCATCGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAAATTGTGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCTCTTGA___TCAACTTCAACATGATGACAAGCAGGCCGCATTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCTATTACTCCCTCCGATTTGCAGCATATATCTCCTCCCTTTCCTCCCGGAGGTGGTGGTCCTCCTCCACCGCCTGGACGAGGGCATCCACCTCCTCCTGCAGGTGGGCCTCAAGGTTCCAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCGTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATGGCGCAATCCGCGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGAAATGGTTGAATTCCAAGGCGCCTGCATCTGTTCTCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCTTGGACTGGAAGCTGCGCAGAAGCCATTCATTTGGGTCTTACAGGATCACCATGATCGTCCTCCCCCTCCTGATCATCCTCCCTGTGATCAGGGTAATAGTGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAATCGAGGGACTGGGTTTGATCGTTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCACCCTTCCACTGGAGGATTTCTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATCGGCTACGGTGTTCCCATCTTGGCATGGCCCATCAGAGGAGATCAGCACTACAATGCCAAATTGCTCGTCAAGGACCTCCAGATTGCGGCCATGATCGACAAGCCAACACAGAATGGGCTTGTGAGCAGGAAGGAAATTGGACATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAGCCCAGTTAAGAGAAAGAGCAGACTCTCTGAAACTCAAGTTCCGCACTACCTGTCTCTTATCCTCCCAAGCCGTGTTAGACACTTTTCTTGATTACCTTTTACCGAAGCAGTCCGAAACTGTTGGAATGAATGTCAGCTTGAAAGTACAGGATCTGGGCGAATAATGAAATGGGATAAGGGGCCCATTAATCCAGCTTTTACTAAAAATGTTATCCGATGCTTTTTATTAATGCAAAGGTTTTGTGTTGTGGGGTGTGCATCTTACTGTCTTATGTTTCACGGGATCCGGCATTGACATGATACTGTTATGAACTATAACCACAAATTGGTTTATTTGAAGACGATAATACTTCCATCATGCTTTTTAGGATAGAATATAATCATTCAATCTGGCAAAAATTGGGACTTCTAAAATGCTGCAAATGTGGCAACA

Fln Alignment:

Contig18560___IVAIPFNGQGHVFPCIELCKRLAAR-GLHITIIADSSVSATLRTVADQSSSSG----LRITFIXXXXXXXXXXXXGDSAPHPDHH-------GHDHMEQQQQKAMEEILQKKLSTPPLCIIGDVMMGWVPELCKKL
B8LPW1_______________LVMFPFMAQGHIIPFLELAKLLAKRTGFAITI---ANTPLNIRNLKPKIDSTGAGLDIRLAELPFSAASHGLPPQAENTDSLPYHLIIRLMEASEHLEPHFERLLRRICQEDGGRLPLCIISDMFFGWTQDVGHRL

SNPs (tot: 111)

Position	A %	C %	G %	T %	Probability
183			40	60	1.0
213			28	71	1.0
217	71		28		1.0
218			71	28	1.0
219		71	28		1.0
220	28			71	1.0
222		57	42		1.0
223	71			28	1.0
224		28	42	28	1.0
233	62		12		1.0
235		37		62	1.0
236	87		12		0.992554
237		62		12	1.0
238	87		12		0.992554
240		12		87	0.992554
241		50		50	1.0
242	87			12	0.992554
244	87		12		0.992554
247			87	12	0.992554
248			62	37	1.0
249	87			12	0.992554
251	12			87	0.992554
259		50		50	1.0
298		88	11		0.923564
303	11		88		0.923564
308		88	11		0.923564
311	88		11		0.923564
366		12		87	0.992554
385		87		12	0.992554
396	88			11	0.923564
399	88		11		0.923564
400		11		88	0.923564
449		87		12	0.992554
475		85		14	0.993533
516	75	25			0.996473
517	50		25	25	0.995533
519		22		77	0.999999
522		11	88		0.923564
523	11		88		0.923564
524		11		88	0.923564
525	77	11			0.968132
526			11	88	0.923564
527	11			88	0.923564
528		88	11		0.923564
529		88	11		0.923564
530		88		11	0.923564
531	77			22	0.999999
533	77		11	11	0.968132
534		22	77		0.999999
535	8		16	75	0.99999
536		66	33		1.0
541	25			75	1.0
544		25		75	1.0
545	25	75			1.0
602		45		54	1.0
610	54			45	1.0
625	45		54		1.0
638		55	44		1.0
649		90	10		0.90298
651		10	90		0.90298
654			10	90	0.90298
655	10			90	0.90298
658		90		10	0.90298
660		90	10		0.90298
661		90	10		0.90298
663			10	90	0.90298
664		80		20	0.999996
666	90		10		0.90298
668		11	88		0.923564
698	44	55			1.0
699			44	55	1.0
725	50			50	1.0
728			50	50	1.0
737	46		53		1.0
826		15	84		0.999986
906	11		88		0.999952
995		22		66	0.999999
1013	30		70		1.0
1023	90			10	0.90298
1024		90		10	0.90298
1027		10		90	0.90298
1029	88		11		0.923564
1031	88		11		0.923564
1220	87			12	0.992554
1224		12	87		0.992554
1249		85		14	0.993533
1251		85		14	0.993533
1255	85	14			0.993533
1382	87			12	0.992554
1383		87	12		0.992554
1384			12	87	0.992554
1388		87	12		0.992554
1391		57	42		1.0
1395		78		21	1.0
1396		14		85	0.999981
1397			21	78	1.0
1398		57	21		1.0
1399		78	21		1.0
1400	57		21	21	1.0
1401		78	21		1.0
1403		21	78		1.0
1404	21	21	57		1.0
1405	78	21			1.0
1406		14	57	28	1.0
1407		28	57	14	1.0
1408	85	14			0.999981
1409	14			85	0.999981
1462		14		85	0.999981
1495	12		87		0.999964
1810		50	33		1.0
1876	25		75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
335	354	GAG GAG GAG GAG GAG GAG GA	20
405	418	AGC AGC AGC AGC AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain