SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18552

Length: 2963 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene18552
CGTCGTGACCTTGGCTGTCACTCAATTGTATACATGGGAAGTAAAGTGCATGATGACCCGGAGCTAACCTCATTCCAGAATCATGAGCTTCTTGCTGCTGTTCATAATGGAAGCATGGAAAAGGCCAAGTTATCTATGGTGTACAGCTACCGTCACGGATTCAGAGGCTTTGCAGCTAAAATATCAGATAACCAGGCAGCAGCTATGGCCAAGATGTCTGGAGTTGTTTCTGTATTTCCCAACAAGCTGAGAAAGCTCCATACAACACACTCTTGGGAGTTCTTGGGCATGCCAGATGACAATTCTTTGGAAACCTCAATTGACTCTACTAGACTTCAAGAGGACATCATCATCGGTATCATAGACACAGGTATATGGCCTGAATCCCCAAGCTTCGACGACCATCTGATGTCTCCTGTACCTTCACGTTGGAAGGGAGTGTGCCAAAGTGCTGATCAATTTCCTTCTTCAACATGCAATAGGAAACTGATTGGTGCCAGGTATTATTTGAGTGGATTGGAGGCTGAGAAACAAGAAACGTTGAAAACAGTAAGTTCTGATGATGGCATAGAATACAGATCTGCAAGAGATAGTCTAGGGCATGGCAGCCATACTGCTTCTATTGCAGCTGGAAGATATGTAAGTAATATTAATTACAATGGTTTAGCAGCTGGAGGTGCTCGGGGAGGAGCTCCACGGGCTCGGATTGCAGTATATAAAACATGCTGGGAATCTGGTTGTTATGATTCAGACATATTGGCTGCATTTGATGATGCAATCAAAGATGGAGTGGACATATTATCTCTTTCATTAGGCCATGATGTTCCTGAAAACGATTACTTCAGTGATGCGATCTCTGTGGGCTCATTCCATGCAACACAAAATGGAATTACTGTGATTTGCTCAGTGGGGAATGATGGGAGTTCTGGCTCTGCAACAAATCTTGCTCCGTGGGTTATTACGGTGGCTGCTAGTTCTACAGATAGGGACTTTATCTCTGACATCAGATTAAGCGAGAACAATGTTACCTACAAAGGTGAAAGCCTGAATATAGCACAGCTGAATGCGTCTGCGGAGCTTTTGTCTGCGGAAAATGCACATGCAAAATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTGGATGATTCTAAAGTGGCAGGAAAGATACTGATTTGCTGGTATCCTGAAGATTCTTCCGAGTCAAGGATATCAAAAAGTCAAATAGTCCAAGCAGCTGGAGGAGTGGGGATGATCCTAATTGATGAGACTGGCAATAGTCTTGCAACTCCTTTTGTTATCCCTGGTGCAATTGTGGACAACAAAGTTGGTGCTGAAATTCTTGCCTATATCAACTCTACCAGGTTTCCTCGAGCCTATGTGTTGCCTGCAGAAACAGTCTTGGGACTCAGGCCAGCACCTCAGGTTGCAGCCTTCTCCTCAAAAGGTCCCAACACACTAACACCGGATATCTTGAAGCCTGACCTCACAGCTCCAGGGTTGAATATACTAGCTGCATGGACACCGGTAAAGAACGACATGCATTTCAACATTGCCTCAGGAACTTCCATGTCTTGTCCACATGTGACAGGAATAGCTGCTTTGATTAAAGCTGCACACCCATCTTGGACTCCATCAGCCATTAAATCTGCCCTCATGACAACAGCTACAGTATTGGATAAAAATAAGAATTTCATAACTGCTGCTCCACAAGGACGGACTGCAAACCCATTTGACTTTGGAGCAGGACTTTTAAGGCCTATGAAAGCAGAAAATCCAGGACTTGTGTACGATGCTGGGCCCACAGATTATGTGAACTTTCTCTGTGGAATTGGCTATGATGATTCATCTCTTAGGCTTGTCACAGGAGATCATAGTGCATGCACAAGCTTTCGTCCAACAGCTTCCAATCTCAATTATCCTTCCATTACAATCTCAGAATTCAATGGCAACAGTTCAGTCATACGAACAGTGACAAATGTAGGAAGCGCAAATAGTACCTATACTGTGAGTATTTCTCCACCTAGAGGGATAAGTGTGCAGGTTGCTCCAAGTATTTTGACATTTAACTTCTATGGCCAAAACATTAGTTTCACGGTGCAGTTCAAAAGGGTTTTCCAAACTCGGGGATATGTATTTGGATCACTTTCTTGGGTGAATGGAAATCAAAGAGTAAGAATACCTTTGGTAGTGGGTTCCTTCGTCTCTTAGGAGTTGTATGGGATCCACTTCAAAATTATTTGAATTCATCCTAGAGCAATATGGAATATGGGGAGAATTGATTGCTAAGGAAAGATGCACCATTCTGGTTACATTTTTGTGAACATTTGTATTTGCAGCATATAACTTCTATTGGATCTCCAATCAGCAATTTGGATTTGCAAGATAGATATTAGAAAGTCATGGACATGTTTCTGTAGCGAGTGAAATTGGAGACCTCTGTAGTTTGGAGAATCTAAGTTGAAAGGATGTTTGTCAAAATATTTGAAGCAGGCAAGAAAGGTGTTGTGTTTACAGATAAAGCTTCTTCCTGGAAAACATCTTTGAGCAGAGTTGCTAACACAGCATTTCTTATTGGAGAAAATGGTCAGACAAGTAGCGAAGTATTCTCATGGTGTACCTTTCAATATGCTCGATTGGATAGCAACTGAGAAAATTACAAGGACTTTGCAACTTCTCCAAAGCACTGTATAACTACTCGAAAGACAAGATATTAACCCCGATTCTTTACTTTTGTATAGTTTTCAAGTTTGTGTTGCCAATCTTCAATAAAGAAAACACAGTATCTTACGTTTGTAAGACCAATTTCTTGTCAAAGAGGAATATACTTGACCTTTTGTATTGCTTTTGGTCAGAATTCCTGTTAAGCAAGATGTTTTGCTTGGTTTGTCTGTTATTAGCATATTGTTTGTGAAGGACCATTCCCTTTGTTGGTATTTACAGCATTATTTAGC

Ace file of the UniGene sp_v2.0_unigene18552

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine protease-like protein [Nicotiana tabacum]	-	-	60%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	42%
Blast2go	subtilisin-like protease-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: your sequence is shorter than subject: 740 - 779

Fln protein: RRDLGCHSIVYMGSKVHDDPELTSFQNHELLAAVHNGSMEKAKLSMVYSYRHGFRGFAAKISDNQAAAMAKMSGVVSVFPNKLRKLHTTHSWEFLGMPDDNSLETSIDSTRLQEDIIIGIIDTGIWPESPSFDDHLMSPVPSRWKGVCQSADQFPSSTCNRKLIGARYYLSGLEAEKQETLKTVSSDDGIEYRSARDSLGHGSHTASIAAGRYVSNINYNGLAAGGARGGAPRARIAVYKTCWESGCYDSDILAAFDDAIKDGVDILSLSLGHDVPENDYFSDAISVGSFHATQNGITVICSVGNDGSSGSATNLAPWVITVAASSTDRDFISDIRLSENNVTYKGESLNIAQLNASAELLSAENAHAKYFTPYQSSFCLNSSLDDSKVAGKILICWYPEDSSESRISKSQIVQAAGGVGMILIDETGNSLATPFVIPGAIVDNKVGAEILAYINSTRFPRAYVLPAETVLGLRPAPQVAAFSSKGPNTLTPDILKPDLTAPGLNILAAWTPVKNDMHFNIASGTSMSCPHVTGIAALIKAAHPSWTPSAIKSALMTTATVLDKNKNFITAAPQGRTANPFDFGAGLLRPMKAENPGLVYDAGPTDYVNFLCGIGYDDSSLRLVTGDHSACTSFRPTASNLNYPSITISEFNGNSSVIRTVTNVGSANSTYTVSISPPRGISVQVAPSILTFNFYGQNISFTVQFKRVFQTRGYVFGSLSWVNGNQRVRIPLVVGSFVS*

Protein Length: 741

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTATACATGGGAAGTAAAGTGCATGATGACCCGGAGCTAACCTCATTCCAGAATCATGAGCTTCTTGCTGCTGTTCATAATGGAAGCATGGAAAAGGCCAAGTTATCTATGGTGTACAGCTACCGTCACGGATTCAGAGGCTTTGCAGCTAAAATATCAGATAACCAGGCAGCAGCTATGGCCAAGATGTCTGGAGTTGTTTCTGTATTTCCCAACAAGCTGAGAAAGCTCCATACAACACACTCTTGGGAGTTCTTGGGCATGCCAGATGACAATTCTTTGGAAACCTCAATTGACTCTACTAGACTTCAAGAGGACATCATCATCGGTATCATAGACACAGGTATATGGCCTGAATCCCCAAGCTTCGACGACCATCTGATGTCTCCTGTACCTTCACGTTGGAAGGGAGTGTGCCAAAGTGCTGATCAATTTCCTTCTTCAACATGCAATAGGAAACTGATTGGTGCCAGGTATTATTTGAGTGGATTGGAGGCTGAGAAACAAGAAACGTTGAAAACAGTAAGTTCTGATGATGGCATAGAATACAGATCTGCAAGAGATAGTCTAGGGCATGGCAGCCATACTGCTTCTATTGCAGCTGGAAGATATGTAAGTAATATTAATTACAATGGTTTAGCAGCTGGAGGTGCTCGGGGAGGAGCTCCACGGGCTCGGATTGCAGTATATAAAACATGCTGGGAATCTGGTTGTTATGATTCAGACATATTGGCTGCATTTGATGATGCAATCAAAGATGGAGTGGACATATTATCTCTTTCATTAGGCCATGATGTTCCTGAAAACGATTACTTCAGTGATGCGATCTCTGTGGGCTCATTCCATGCAACACAAAATGGAATTACTGTGATTTGCTCAGTGGGGAATGATGGGAGTTCTGGCTCTGCAACAAATCTTGCTCCGTGGGTTATTACGGTGGCTGCTAGTTCTACAGATAGGGACTTTATCTCTGACATCAGATTAAGCGAGAACAATGTTACCTACAAAGGTGAAAGCCTGAATATAGCACAGCTGAATGCGTCTGCGGAGCTTTTGTCTGCGGAAAATGCACATGCAAAATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTGGATGATTCTAAAGTGGCAGGAAAGATACTGATTTGCTGGTATCCTGAAGATTCTTCCGAGTCAAGGATATCAAAAAGTCAAATAGTCCAAGCAGCTGGAGGAGTGGGGATGATCCTAATTGATGAGACTGGCAATAGTCTTGCAACTCCTTTTGTTATCCCTGGTGCAATTGTGGACAACAAAGTTGGTGCTGAAATTCTTGCCTATATCAACTCTACCAGGTTTCCTCGAGCCTATGTGTTGCCTGCAGAAACAGTCTTGGGACTCAGGCCAGCACCTCAGGTTGCAGCCTTCTCCTCAAAAGGTCCCAACACACTAACACCGGATATCTTGAAGCCTGACCTCACAGCTCCAGGGTTGAATATACTAGCTGCATGGACACCGGTAAAGAACGACATGCATTTCAACATTGCCTCAGGAACTTCCATGTCTTGTCCACATGTGACAGGAATAGCTGCTTTGATTAAAGCTGCACACCCATCTTGGACTCCATCAGCCATTAAATCTGCCCTCATGACAACAGCTACAGTATTGGATAAAAATAAGAATTTCATAACTGCTGCTCCACAAGGACGGACTGCAAACCCATTTGACTTTGGAGCAGGACTTTTAAGGCCTATGAAAGCAGAAAATCCAGGACTTGTGTACGATGCTGGGCCCACAGATTATGTGAACTTTCTCTGTGGAATTGGCTATGATGATTCATCTCTTAGGCTTGTCACAGGAGATCATAGTGCATGCACAAGCTTTCGTCCAACAGCTTCCAATCTCAATTATCCTTCCATTACAATCTCAGAATTCAATGGCAACAGTTCAGTCATACGAACAGTGACAAATGTAGGAAGCGCAAATAGTACCTATACTGTGAGTATTTCTCCACCTAGAGGGATAAGTGTGCAGGTTGCTCCAAGTATTTTGACATTTAACTTCTATGGCCAAAACATTAGTTTCACGGTGCAGTTCAAAAGGGTTTTCCAAACTCGGGGATATGTATTTGGATCACTTTCTTGGGTGAATGGAAATCAAAGAGTAAGAATACCTTTGGTAGTGGGTTCCTTCGTCTCTTAG___GAGTTGTATGGGATCCACTTCAAAATTATTTGAATTCATCCTAGAGCAATATGGAATATGGGGAGAATTGATTGCTAAGGAAAGATGCACCATTCTGGTTACATTTTTGTGAACATTTGTATTTGCAGCATATAACTTCTATTGGATCTCCAATCAGCAATTTGGATTTGCAAGATAGATATTAGAAAGTCATGGACATGTTTCTGTAGCGAGTGAAATTGGAGACCTCTGTAGTTTGGAGAATCTAAGTTGAAAGGATGTTTGTCAAAATATTTGAAGCAGGCAAGAAAGGTGTTGTGTTTACAGATAAAGCTTCTTCCTGGAAAACATCTTTGAGCAGAGTTGCTAACACAGCATTTCTTATTGGAGAAAATGGTCAGACAAGTAGCGAAGTATTCTCATGGTGTACCTTTCAATATGCTCGATTGGATAGCAACTGAGAAAATTACAAGGACTTTGCAACTTCTCCAAAGCACTGTATAACTACTCGAAAGACAAGATATTAACCCCGATTCTTTACTTTTGTATAGTTTTCAAGTTTGTGTTGCCAATCTTCAATAAAGAAAACACAGTATCTTACGTTTGTAAGACCAATTTCTTGTCAAAGAGGAATATACTTGACCTTTTGTATTGCTTTTGGTCAGAATTCCTGTTAAGCAAGATGTTTTGCTTGGTTTGTCTGTTATTAGCATATTGTTTGTGAAGGACCATTCCCTTTGTTGGTATTTACAGCATTATTTAGC

Fln Alignment:

Contig18552___IVYMGSKVHDDPELTSFQNHELLAAVHNGSMEKAKLSMVYSYRHGFRGFAAKISDNQAAAMAKMSGVVSVFPNKLRKLHTTHSWEFL----GMPDDNSLETSIDSTRLQEXXXXXXXXXXXWPESPSFDDHLMSPVPSRWKGVCQSADQFPSSTCNRKLIGARYYLSGLEAEKQETLKTVSSDDGI--EYRSARDSLGHGSHTASIAAGRYVSNINYNXXXXXXXXXXXXXXX--IAVYKTCW-ESGCYDSDILAAFDDAIKDGVDILSLSLG-HDVPENDYFSDAISVGSFHATQNGITVICSVGNDG-SSGSATNLAPWVITVAASSTDRDFISDIRLSENNVTYKGESLNIAQLNASA--ELLSAENAHAKYFTPYQSSFCLNSSLDDSKVAGKILICWYPEDSSESRISKSQIVQAAGGVGMILIDETGNSLATPF-VIPGAIVDNKVGAEILAYINSTRFPRAYVLPAETVLGLRPAPQVAAFSSKGPNTLTPDILKPDLTAPGLNILAAWTP--------VKNDM---HFNIASGTSMSCPHVTGIAALIKAAHPSWTPSAIKSALMTTATVLDKNKNFITAAPQGRTANPFDFGAGLLRPMKAENPGLVYDAGPTDYVNFLCGIGYDDSSLRLVTGDHS-ACTS--FRPTASNLNYPSITISEF---NGNSSVIRTVTN-VGSANSTYTVSISPPRGISVQVAPSILTFNFYGQNISFTVQFKRV-FQTRGYVFGSLSWVNGNQRVRIPLVV
Q40764_______________IVYMGSLSHNNREDLVTSHLEVLSSVLE-SPRHAKQSLVRSYTYAFNGFAAVLSKEQATTLVGKPGVLSVFPDTVLNLHTTHSWDYLEKDLSMPGFSYRKPKSSGTDI----ILGFLDTGIWPEAASFSDKGMGPVPSRWKGACVKGENFNVSNCNRKIIGARYYSGG----EDDDLKKNSKPKSIWPESRTARDYQGHGTYTAATAAGSFVDNANYNGLANGTARGGSASSSTRIAMYRVCGLDYGCPGVQILAAFDDAVKDGVDIVSISIGVRSSNQADFVKDAIAIGAFHATQKGILVVSSAGNEGPDSQTVVNAAPWIFTVGATSIDREFLSNVVLGNGKII-KGKGITMSNLSHSAVHPLVYAGSIPDKSSYPVAASNCLLDSLDASKAKGNVVVC-IANDTAASRYIMKLAVQDAGGIGMVVVEDIQIFEAFDYGTFPATAVSKTSATEIFSYIKSNRNPVATITLTEVVTNYIPAPVIASFSSRGPGGLTQNILKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTFNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTA-IVRNNMGKLLTNESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIAISKLGIKNGSTTISRSVTNFVPEQAPTYKVTIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNVATKGYAFGTLVWSDGKHNVRSPFAV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
648	16			83	0.994512
650	16			83	0.994512
1063		88		11	0.923564
1422		54	45		1.0
1477		63	36		1.0
2063		66		33	0.997452
2096	25			25	0.995533
2097	75			25	0.996473
2098	75	25			0.996473
2189	25		75		0.996473
2190		25		75	0.996473
2192	75			25	0.996473
2193			75	25	0.996473
2389	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain