SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18535

Length: 1184 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene18535 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS box protein n=6 Tax=Cucurbitaceae RepID=C5IS80_CUCSA	-	-	1.0e-20	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	mads box protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMI6

Fln msg:

Fln protein: MGKKKVEVNLIQNPTSRHSTFYKRKGGLLKKAFELSVLCDVEVALIIFSETGRIYEFASHDDVTTILTKYRIQTETARNAMSSSLQNTECCQLEVKMLQEKLDKLEKAKKNMVGENLESLTLKELQQLEKQLERAIKKIYNKKRKIISRTCKSLLKKVRSLEEENSELLTKLIPRADSSTSGAALYVDTSMPKSHSDMGNEDGDNSSSESL*

Protein Length: 213

Fln nts: ATGGGGCTGAAACTGGACAGAAAGAAAGTATGAAAATGGGAAAGAAGAAGCTGGAGATGAAGCGCATTCAAAACTAGAGATCAGAAACCGGGGCTCTGACGAATACTGAAACTAGATATACCTACCTCTTAAA_-_ATGGGAAAGAAGAAGGTGGAGGTGAATCTCATTCAAAACCCTACAAGTCGCCACTCAACTTTCTACAAACGCAAGGGCGGTTTGCTTAAAAAAGCCTTTGAACTTTCTGTTCTGTGTGATGTTGAAGTCGCTCTTATAATCTTCTCTGAAACCGGCAGGATTTACGAGTTTGCGAGCCACGACGACGTCACCACAATATTGACAAAATACCGAATACAAACGGAAACAGCCAGAAACGCAATGTCTTCATCGCTTCAAAACACAGAGTGTTGTCAATTAGAAGTCAAGATGTTGCAGGAGAAGCTAGACAAATTGGAGAAAGCGAAAAAGAATATGGTTGGTGAGAATTTGGAGTCACTAACGTTGAAAGAATTGCAACAACTGGAAAAGCAATTAGAGAGGGCTATAAAAAAGATTTATAATAAAAAGAGGAAAATAATTTCACGAACTTGCAAATCATTATTGAAAAAGGTACGCTCTTTGGAAGAGGAGAATAGTGAACTTCTTACCAAGTTGATTCCTAGAGCCGATTCCTCCACTTCTGGGGCTGCGTTATATGTTGATACATCCATGCCAAAATCTCACTCTGATATGGGCAACGAAGATGGCGACAACTCTTCCAGCGAGTCCTTGTGA___CAGCAGCGAAGATGGCGACAACTCCTCCAGCGAGACACAGTAATTCCCGATCTAACCACTATTTATTGCTGCTGTTCCACCGATTATAGCAATAAAATAAATCGTGGTTTGAGACAATCACATATATATTCATTGACATTTTATAGCTCTTTCACCAATTCCAAACCTTGTGGCATATATGCATGAGCGCTGAACCAAGTTGACGTTCATATGTCAATATACTTAATTAATTAATATTAAGTGTCTGTTAATATTAAGTTTTTGCTTCTTGTAGTACTGAAAACCATACCTGGATAAGATTGATATCACCATATGTTGCTGTCGTACCCCTCCAAACTTTCTAACGAAGATATTATTCCATGCGAAATTATATGACATGAATTATATGTGAATATAATTAATTTAGTTTAAAGTT

Fln Alignment:

Contig18535___MGKKKVEVNLIQNPTSRHSTFYKRKGGLLKKAFELSVLCDVEVALIIFSETGRIYEFASHDDVTTILTKYRIQTETARNAMSSSLQNTECCQLEVKMLQEKLDKLEKAKKNMVGENXXXXXXXXXXXXXXXXERAXXXXXXXXXXXISRTCKSLLKKVRSLEEENSELLTKLIPRADSSTSGAALYVDTSMPKSHSDM--GNEDGD
A9NMI6_______________MGKTKMEMKRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKISEFASHDDVATILEKYRIYTETNGNLGSTSLQNIKFGELRLKTLHEKMDVLKKKEKNMVGEDLESLTMKELQRLEKQLQTGIKRISDRKMRIFAQSSKLLIQKVRILEEEKIELQTKLSARGDSSTSATNLDLGLSYSTMASGPCDGNRNGD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
564		11		88	0.923564
566		11		88	0.923564
589	62			37	1.0
590		25		75	1.0
702	87	12			0.992554
703	87	12			0.992554
729		16	83		0.994512
730		83		16	0.994512
731		33		66	1.0
732	16	16		66	0.988813
733		16		83	0.994512
734	20	80			0.995493
767		12	87		0.992554
870		16	83		0.994512
888	40		60		1.0
936	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
181	193	ATTA ATTA ATTA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain