SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18448

Length: 2502 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene18448
GTAAACGGGTACGTCGTGACCTTGGCTGTCACGTCGTTATCTTGTCAGACCGGTTTTTGGTCTTGGGTTTCTATTATGGCGATAGAGAGGGACTTCGATGGAGTGGCCGGAGTTTGCAGGTGAAGGAGCCGCTGCTGGTGGCGGTTGTTGGGTTGGGTCGGATTGGGGTGGCGGGTTTGGCAAGCTTTAGTTGTTGTATAGTTCTTTTCCATGTAACTGTTTGAAAGGGGAATAGGGATTTTGCGTCAATAGAACGACTCCGCGCATTTTTCTCATGGATTGCAGCAGCCGGACAATAGGAGTGTCTGAAGCCGTCTTTGGCGGGCGGGCAAAATTCTTGGCTGTAGGTCGTCGCCTGTTCGAATCCCGCAGGCTTCTCTTTTTCTTGGGTATTTGAATAAGGAAGTAGAAGGGCTTTTTGAATGAAGGGAATGACGAAGATACTGGGTGGGAAGCTGAGAAAAAACAAGCCATGCCTCACGCCAGATGAACGGAGTAGCCATAATAAATCTAAACATTGCAGAGCTGATAAATCCCAGAGGCGCTGTTATGGCTATGCTCGTTTTTTCCTCTGGGTTTCTATGCTGCTGTATCTGTGCTCTGCAGGGCCGGATTTATTCTGGCTTGCGGCCTGGAAACCCGAGAAGCCTGAGGCTGTGGGGGATGTGATTCAGAAGCCCATGGTTCGAGCCGGTGGCCTGGTTACTAATGTTCTCGCAGAGGAAAATTATACGCAGGGGCGTGGGAAAAAGAATGTGTTTTCTGATTCGAGGGCAGAGTTTTCAGGATTTGTGGATGTAAAAGTATTTGTTTATGAGCTCCCATCCGAGTTCAATGAGGATTGGCTTGTGAACAGCCGTTGCGCCAGTCATCTGTTTGCTGCAGAGGTCGCCATACACCGTGCTCTGTTGAATAGCTCTGTGCGTCGTGTTCGATCCCAAGGAAGCTGATTTTTTCTTTGTGCCTGTCTATGTTTCGTGTAATTTCAGTACCAAGAATGGTTTCCCCGCTCTGGGCCACGCGCGGCCTCTTCTTGGCTCTGCGGTGCGCTACATATCAGAGACCATGCCTTTCTGGAACAGGAGTGGAGGCTCAGATCATGTTTTCGCTGCTACGCATGATTATGGAGCATGCTTCCATGCCATGGAGGATGTTGCAATTCGTGATGGGATACCGGAGTTCCTGCAGAACTCTATAATCTTGCAAACCTTTGGCGTCAAGGGCAAGCACCGTTGCCAGGACGTGGAACACATACAGATTCCTCCTTACGTTGCCCCCAAGCCAATCGAAGCTCTGTGGGCTGCTGCGCCTCCCAAGGCTAAGCGTGATATTTGGGTCTTTTTCAGAGGAAAGATGGAGATTCATCCAAAAAATATCAGCGGCCGTGTATACAGCAAAGGATTGAGAACAGTGATATGGCAAAAGTTTGGGCACAACAGGAGATTCTACATAAAGCGGACGCGATTCGAGGGATACCACACAGAAATTGCCCGGCGCTCAGTTTTCTGCCTCTGCCCGTTGGGGTGGGCACCCTGGAGCCCCCGCATAGTGGAATCTGTGGCTCTGGGCTGCATCCCGGTCATCATCGCGGACAACGTTGCCCTGCCATACCCAGACGTGGTTCCATGGGCGAACATCTCGCTGTCAGTGCCTGAGCGTGACGTGGCGAAGCTGGGCAAGGTGCTGGAACGAGTCACGGCCACAAACCTCACCGCCATACAGAACAACCTCTGGAATGACACCATCCGACGGGCTCTGCTGTTCAATGAGCCATTCCAGCGTGGCGACGCTACATGGCAGGTTCTACAGGGTCTGACACGTAAGCTCAGAAGGTCGTATCGGAACAGGCACACGTCAGTGTTACTCGAGTAGAAAGGTCAGGATTACCTCATCTCTGGGTATGTTGCATTATTAGGTCTTGCACGTCGTAGATGTGTCAGGCAATAATTCAGCTCCGGCATGTGGTATTTTATTTAGTGGCGTTCGGCTTATAAGTTCTGGGACAGAAAATGGAATACGGTGGCAGGGTTACATGTACAGCGATGCAGCTGCTTTTATGACAGATTATTAGCGGTCACATGCAAAAGAACGCCACGCTGGATTGGCAGGCTCGATTGGGTCCCACGCCTTTTTTTCTTGTTGTTGGTCGTGTCTTCGGCAGAGAGAGCATCCGCTGGCAAGTTTGTGGCAGACCCCAGAAAGCTGGGTCAGTGTTTGGGTAAAGAAGCGATCAAAGTTGCAAAAAGCCCAAGAGGTCGATGACGTGTCTAGCGTTCTCCGGGAGGAGAGGAGCCGTGTACGGGTCTCGATTTTGACTTCCGTGAAGGCTTTTATCAATTTCCGCCAACTCAGCATCCATCACGTTCAAACCTTAAAACCTCTTGCTCTATACGCTTAATTATTGAGCTCACCAGTTTCCGATAATATTTTTTTATTTTCATAATTCAAAAATATCATATTCAAAAGGATGAGTCCTCTGAAGGAAACTACGTGATATACATA

Ace file of the UniGene sp_v2.0_unigene18448

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, putative	-	-	66%
FL-Next	sp=Probable glucuronoxylan glucuronosyltransferase IRX7; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	probable glucuronoxylan glucuronosyltransferase irx7-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	78%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exostosin-like	IPR004263	-	0.0	-
Sma3	Peroxidase, active site	IPR019794	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZUV3

Fln msg: Separated hits, possible frame ERROR between 914 and 934, your sequence is longer than subject: 484 - 448

Fln protein: MKGMTKILGGKLRKNKPCLTPDERSSHNKSKHCRADKSQRRCYGYARFFLWVSMLLYLCSAGPDLFWLAAWKPEKPEAVGDVIQKPMVRAGGLVTNVLAEENYTQGRGKKNVFSDSRAEFSGFVDVKVFVYELPSEFNEDWLVNSRCASHLFAAEVAIHRALLxxxxxxxxDPKEADFFFVPVYVSCNFSTKNGFPALGHARPLLGSAVRYISETMPFWNRSGGSDHVFAATHDYGACFHAMEDVAIRDGIPEFLQNSIILQTFGVKGKHRCQDVEHIQIPPYVAPKPIEALWAAAPPKAKRDIWVFFRGKMEIHPKNISGRVYSKGLRTVIWQKFGHNRRFYIKRTRFEGYHTEIARRSVFCLCPLGWAPWSPRIVESVALGCIPVIIADNVALPYPDVVPWANISLSVPERDVAKLGKVLERVTATNLTAIQNNLWNDTIRRALLFNEPFQRGDATWQVLQGLTRKLRRSYRNRHTSVLLE*

Protein Length: 485

Fln nts: GTAAACGGGTACGTCGTGACCTTGGCTGTCACGTCGTTATCTTGTCAGACCGGTTTTTGGTCTTGGGTTTCTATTATGGCGATAGAGAGGGACTTCGATGGAGTGGCCGGAGTTTGCAGGTGAAGGAGCCGCTGCTGGTGGCGGTTGTTGGGTTGGGTCGGATTGGGGTGGCGGGTTTGGCAAGCTTTAGTTGTTGTATAGTTCTTTTCCATGTAACTGTTTGAAAGGGGAATAGGGATTTTGCGTCAATAGAACGACTCCGCGCATTTTTCTCATGGATTGCAGCAGCCGGACAATAGGAGTGTCTGAAGCCGTCTTTGGCGGGCGGGCAAAATTCTTGGCTGTAGGTCGTCGCCTGTTCGAATCCCGCAGGCTTCTCTTTTTCTTGGGTATTTGAATAAGGAAGTAGAAGGGCTTTTTGA_-_ATGAAGGGAATGACGAAGATACTGGGTGGGAAGCTGAGAAAAAACAAGCCATGCCTCACGCCAGATGAACGGAGTAGCCATAATAAATCTAAACATTGCAGAGCTGATAAATCCCAGAGGCGCTGTTATGGCTATGCTCGTTTTTTCCTCTGGGTTTCTATGCTGCTGTATCTGTGCTCTGCAGGGCCGGATTTATTCTGGCTTGCGGCCTGGAAACCCGAGAAGCCTGAGGCTGTGGGGGATGTGATTCAGAAGCCCATGGTTCGAGCCGGTGGCCTGGTTACTAATGTTCTCGCAGAGGAAAATTATACGCAGGGGCGTGGGAAAAAGAATGTGTTTTCTGATTCGAGGGCAGAGTTTTCAGGATTTGTGGATGTAAAAGTATTTGTTTATGAGCTCCCATCCGAGTTCAATGAGGATTGGCTTGTGAACAGCCGTTGCGCCAGTCATCTGTTTGCTGCAGAGGTCGCCATACACCGTGCTCTGTTGAAxxxxxxxxxxxxxxxxxxxxxCGATCCCAAGGAAGCTGATTTTTTCTTTGTGCCTGTCTATGTTTCGTGTAATTTCAGTACCAAGAATGGTTTCCCCGCTCTGGGCCACGCGCGGCCTCTTCTTGGCTCTGCGGTGCGCTACATATCAGAGACCATGCCTTTCTGGAACAGGAGTGGAGGCTCAGATCATGTTTTCGCTGCTACGCATGATTATGGAGCATGCTTCCATGCCATGGAGGATGTTGCAATTCGTGATGGGATACCGGAGTTCCTGCAGAACTCTATAATCTTGCAAACCTTTGGCGTCAAGGGCAAGCACCGTTGCCAGGACGTGGAACACATACAGATTCCTCCTTACGTTGCCCCCAAGCCAATCGAAGCTCTGTGGGCTGCTGCGCCTCCCAAGGCTAAGCGTGATATTTGGGTCTTTTTCAGAGGAAAGATGGAGATTCATCCAAAAAATATCAGCGGCCGTGTATACAGCAAAGGATTGAGAACAGTGATATGGCAAAAGTTTGGGCACAACAGGAGATTCTACATAAAGCGGACGCGATTCGAGGGATACCACACAGAAATTGCCCGGCGCTCAGTTTTCTGCCTCTGCCCGTTGGGGTGGGCACCCTGGAGCCCCCGCATAGTGGAATCTGTGGCTCTGGGCTGCATCCCGGTCATCATCGCGGACAACGTTGCCCTGCCATACCCAGACGTGGTTCCATGGGCGAACATCTCGCTGTCAGTGCCTGAGCGTGACGTGGCGAAGCTGGGCAAGGTGCTGGAACGAGTCACGGCCACAAACCTCACCGCCATACAGAACAACCTCTGGAATGACACCATCCGACGGGCTCTGCTGTTCAATGAGCCATTCCAGCGTGGCGACGCTACATGGCAGGTTCTACAGGGTCTGACACGTAAGCTCAGAAGGTCGTATCGGAACAGGCACACGTCAGTGTTACTCGAGTAG___AAAGGTCAGGATTACCTCATCTCTGGGTATGTTGCATTATTAGGTCTTGCACGTCGTAGATGTGTCAGGCAATAATTCAGCTCCGGCATGTGGTATTTTATTTAGTGGCGTTCGGCTTATAAGTTCTGGGACAGAAAATGGAATACGGTGGCAGGGTTACATGTACAGCGATGCAGCTGCTTTTATGACAGATTATTAGCGGTCACATGCAAAAGAACGCCACGCTGGATTGGCAGGCTCGATTGGGTCCCACGCCTTTTTTTCTTGTTGTTGGTCGTGTCTTCGGCAGAGAGAGCATCCGCTGGCAAGTTTGTGGCAGACCCCAGAAAGCTGGGTCAGTGTTTGGGTAAAGAAGCGATCAAAGTTGCAAAAAGCCCAAGAGGTCGATGACGTGTCTAGCGTTCTCCGGGAGGAGAGGAGCCGTGTACGGGTCTCGATTTTGACTTCCGTGAAGGCTTTTATCAATTTCCGCCAACTCAGCATCCATCACGTTCAAACCTTAAAACCTCTTGCTCTATACGCTTAATTATTGAGCTCACCAGTTTCCGATAATATTTTTTTATTTTCATAATTCAAAAATATCATATTCAAAAGGATGAGTCCTCTGAAGGAAACTACGTGATATACATA

Fln Alignment:

Contig18448___FVDVKVFVYELPSEFNEDWLVNSRCASHLFAAEVAIHRALLNxxxxxxxDPKEADFFFVPVYVSCNFSTKNGFPALGHARPLLGSAVRYISETMPFWNRSGGSDHVFAATHDYGACFHAMEDVAIRDGIPEFLQNSIILQTFGVKGKHRCQDVEHIQIPPYVAPKPIEALWAAAPPKAKRDIWVFFRGKMEIHPKNISGRVYSKGLRTVIWQKFGHNRRFYIKRTRFEGYHTEIARRSVFCLCPLGWAPWSPRIVESVALGCIPVIIADNVALPYPDVVPWANISLSVPERDVAKLGKVLERVTATNLTAIQNNLWNDTIRRALLFNEPFQRGDATWQVLQGLTRKLRRSYRNRHT
Q9ZUV3_______________FNNLKIYVYDLPSKFNKDWLANDRCTNHLFAAEVALHKAFLSxxxxxxxDPYEADFFFVPVYVSCNFSTINGFPAIGHARSLINDAIKLVSTQYPFWNRTSGSDHVFTATHDFGSCFHTMEDRAIADGVPIFLRNSIILQTFGVTFNHPCQEVENVVIPPYISPESLHKTQKNIPVTKERDIWVFFRGKMELHPKNISGRFYSKRVRTNIWRSYGGDRRFYLQRQRFAGYQSEIA-RSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPSTVRWPDISLTVAERDVGKLGDILEHVAATNLSVIQRNLEDPSVRRALMFNVPSREGDATWQVLEALSKKLNRSVRRSNS

SNPs (tot: 119)

Position	A %	C %	G %	T %	Probability
12		66		33	0.997452
13			66	33	0.997452
17	33			66	0.997452
21		66	33		0.997452
22			33	66	0.997452
23			33	66	0.997452
29			33	66	0.997452
30	33	66			0.997452
32	33	33			0.997753
33	33			33	0.997753
35	0	33	33	33	0.998258
36			33	33	0.997753
38		33	33		0.997753
40	33		33	33	0.997753
43	33	33		33	0.997753
49	50	16		33	1.0
53	83			16	0.994512
55		50	16	33	1.0
56		33	50	16	1.0
57	33		66		1.0
58	16			83	0.994512
59		16		83	0.994512
60		16		83	0.994512
70			83	16	0.994512
71		16	83		0.994512
72	16			83	0.994512
73		16		83	0.994512
76	16			83	0.994512
457	81			18	0.999994
458	81	18			0.999994
461	11			88	0.923564
563	11	88			0.923564
564		12		87	0.992554
566			87	12	0.992554
568		14	14	71	0.984337
569			28	71	1.0
570		14		85	0.993533
571			14	85	0.993533
572	14		14	71	0.984337
573		85		14	0.993533
575	14			85	0.993533
579		14	85		0.993533
580	14	14	71		0.984337
582			14	85	0.993533
591		14	85		0.993533
592	14	85			0.993533
696		40	60		1.0
1082		14		85	0.993533
1251		72		27	1.0
1283	14	85			0.993533
1515	25			25	0.995533
1630		14	85		0.993533
1633	14			85	0.993533
1636	57		28	14	1.0
1644	14		85		0.993533
1645	85	14			0.993533
1646	85			14	0.993533
1707		71	28		1.0
1806	83		16		0.994512
1818	80		20		0.995493
1842	80	20			0.995493
1858	80	20			0.995493
1966	83		16		0.994512
1979		25	75		1.0
1982	71	28			1.0
1983			33	66	1.0
1985			33	66	1.0
1986	33			66	1.0
1987	66	33			1.0
1988		33		66	1.0
1991	66		33		1.0
1995			66	33	1.0
1997	33		66		1.0
1998		33		66	1.0
2001	16		83		0.994512
2016		14	85		0.993533
2018	85			14	0.993533
2020	85			14	0.993533
2023	85	14			0.993533
2024	85	14			0.993533
2025	85			14	0.993533
2026		22		77	0.999999
2028			77	22	0.999999
2029	66	33			1.0
2030	66		22	11	0.999999
2031			11	88	0.923564
2032	88			11	0.923564
2034	11	22	66		0.999999
2035		11	66	22	0.999999
2038		12	87		0.992554
2039	12	87			0.992554
2040	75			25	1.0
2042		25	75		1.0
2043	25		75		1.0
2044		25		75	1.0
2046	75	25			1.0
2047	25	75			1.0
2140	12	87			0.992554
2142		87		12	0.992554
2148		12		87	0.992554
2155	9		90		0.999872
2180	90	3		6	0.997952
2185	90	6	3		0.997952
2187		93		6	0.999364
2188		93	6		0.999364
2193			93	6	0.999364
2196	93	6			0.999364
2197	6		93		0.999364
2210		94	5		0.998397
2211		94	5		0.998397
2213	94			5	0.998397
2215	90	7		1	1.0
2217	92	5	1		0.999988
2218			92	7	1.0
2220	3			94	0.960243
2227			96	3	0.99245
2286	96		3		0.991825
2301			96	3	0.99245
2389	13			86	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain