SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18441

Length: 974 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18441

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquinol-cytochrome C reductase complex 14kD subunit n=1 Tax=Wolffia arrhiza RepID=D1MI91_WOLAR	-	-	9.0e-36	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	ubiquinol-cytochrome c reductase subunit 7	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	82%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome d ubiquinol oxidase, 14kDa subunit	IPR003197	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
92	50	25		25	0.995533
93	25		50	25	0.995533
94	25		75		0.996473
95	25		75		0.996473
96			75	25	0.996473
114	80			20	0.995493
115	80		20		0.995493
116			20	80	0.995493
118			20	80	0.995493
883	89		10		1.0
950		16	83		0.994512
954		25		75	0.996473
956	25			75	0.996473
957	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain