SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18291

Length: 673 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18291

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRE87 protein n=1 Tax=Pinus radiata RepID=O65014_PINRA	-	-	1.0e-30	92%
FL-Next	tr=PRE87 protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	92%
Blast2go	myo-inositol oxygenase	-	-	1.64624e-37	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
57		20	80		0.995493
58	80			20	0.995493
59	80		20		0.995493
152	16		83		0.994512
156	87	12			0.992554
158	87			12	0.992554
159	87	12			0.992554
160			12	87	0.992554
164		12		87	0.992554
165			87	12	0.992554
169	87	12			0.992554
170			87	12	0.992554
172	87			12	0.992554
174		12	87		0.992554
176		12	87		0.992554
251	41		52	5	1.0
268	5	55		38	1.0
271		5	82	11	0.999919
274	64			35	1.0
289		30	70		1.0
403			55	45	1.0
404	45	55			1.0
447			57	42	1.0
475		41	58		1.0
592		33		66	1.0
603	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain