SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18207

Length: 999 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene18207 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03911, Sec61_beta, Sec61beta family	-	-	5.0e-14	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein transport protein sec61 beta subunit	-	-	4.31151e-26	82%

Source	InterPros	Term	Type	Identity
Sma3	Preprotein translocase Sec, Sec61-beta subunit	IPR005609	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal	IPR015895	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Preprotein translocase Sec, Sec61-beta subunit, eukarya	IPR016482	-	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
599			20	80	0.999996
601	90		10		0.90298
602	20			80	0.999996
603	80	20			0.999996
845	9			90	1.0
847		90		9	1.0
848	90			9	1.0
849	90		9		1.0
853	90		9		1.0
855		3		90	0.997544
857		6	90	3	0.997544
858	90	3		6	0.997544
859		9	90		1.0
860		9	87	3	1.0
861		6	90	3	0.997544
863	3	9		87	1.0
864		12		87	1.0
865	93	6			0.999264
866		6	90	3	0.997544
868		3	90	6	0.997952
921	11			88	0.999937
922	83		16		1.0
924	77		22		1.0
925		77		22	1.0
926		77	22		1.0
928	5	16		77	1.0
929	88		11		0.999937
932	11	88			0.999937
933		5	77		1.0
934		5	77		1.0
937	5		5	72	1.0
938			23	76	1.0
940		76		23	1.0
943	76	23			1.0
944			23	76	1.0
955			33	66	1.0
959	27			72	1.0
960	27		72		1.0
963	70			30	1.0
965		70		30	1.0
967	60			30	1.0
969	22		77		0.999999
971	20			80	0.999999
972	22	77			0.999999
974	20	80			0.999999
975	20		80		0.999999
977		77		22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain