SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18079

Length: 1098 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene18079

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small heat-shock protein n=2 Tax=Funaria hygrometrica RepID=B7ZEP9_FUNHY	-	-	7.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	heat shock protein 21	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	66%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	66%
Blast2go	response to heat	GO:0009408	Biological Process	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM88

Fln msg:

Fln protein: MAGRLIVKRLADKTLPSSLRNAGTISAFQSKNLSTAAVTVQDSEKKDIEETPRRRRRSPAFRRRGNFAPFGLSGIWDPFPASRTLTQMMDNVNRLFEDFLPSRTDGDLVDNFRVPYDIMEDEKSYKLRFDMPGLSKEEVKVGIEDGTLVIKGEHSEESQKDNLISRSQGSYNTRIILPDNVRLEETKAEMKNGVLQVFVPKVEEAKTQNLIDVKVE*

Protein Length: 218

Fln nts: ATGGGGGCCACTCTTTTCTTCTTCTAGACACCTCCTGTAATGGGGGTTCACCTGCAATTTAAACACTGGCGCTTCACTCCCCCATTATCTTATCGTCTGGTTATCGTCGAAAATACCTTGCTACTTGTGTCATTTCCAAGATACATAAGCTAAGCTATCTGCTTACTGATTCTGTTTGAAGCACAACA_-_ATGGCGGGCCGACTGATCGTAAAAAGATTAGCAGACAAAACCCTCCCATCAAGTCTAAGAAATGCCGGGACGATTTCGGCCTTTCAGAGCAAAAATCTTTCAACGGCGGCCGTGACGGTGCAAGATAGCGAGAAGAAGGATATTGAAGAAACTCCGAGAAGACGCCGTCGGAGCCCGGCGTTCAGAAGACGTGGGAATTTCGCTCCCTTTGGCTTATCAGGCATATGGGATCCATTCCCCGCGAGTCGAACTCTGACGCAGATGATGGACAATGTTAACCGCCTGTTCGAAGACTTTCTCCCGTCTCGGACCGATGGGGACCTGGTGGACAACTTTCGAGTCCCGTACGATATCATGGAAGACGAGAAGTCGTATAAGCTGCGGTTCGACATGCCTGGCCTGAGCAAAGAAGAGGTTAAGGTGGGCATCGAGGATGGAACCCTCGTCATCAAAGGCGAACACAGCGAGGAGTCGCAGAAGGACAATTTGATCTCCAGGAGCCAAGGCAGCTACAACACTCGTATAATTTTGCCCGACAATGTCCGCCTGGAGGAGACGAAGGCAGAAATGAAGAATGGGGTTTTGCAGGTGTTCGTGCCTAAGGTCGAGGAAGCTAAAACCCAGAACCTTATCGATGTAAAGGTTGAATAA___ATTTCGGGATCTTTGTCTCGGCGATCATCGGAGTTTTCTCGTTGTGAGAAATAAATGATACCTAGATGTAAGGAAAGTAGGAAGTAGATGGTGGGAATATCTGTAGTAGAAAACTGACGTCATGATATGCAACTTGTGAATCATGAACCATGTAAACCTGTCGTTTTGGCCGTAATTTAAATTCAGTATCCAATGACGTTATAAATTTGTGCTTTCACAAATGAGTTTATGATATTTATGGTCATATATAAATCAAAAT

Fln Alignment:

Contig18079___MAGRLIVKRLADKTLPSSLRNAGTISAFQSKNLSTAAVTVQDSEKKDIEETPXXXXXXXXXXXXGNFAPFGLSGIWDPFPASRTLTQMMDNVNRLFEDFLPSRTDGDLVDNFRVPYDIMEDEKSYKLRFDMPGLSKEEVKVGIEDGTLVIKGEHSEESQKDNLISRSQGSYNTRIILPDNVRLEETKAEMKNGVLQVFVPKVEEAKTQNLIDVKV
B8LM88_______________MAGRLIAKRLADKTFPSNLRGVATISAFQSKSLSTAAVPVQDNEKKDIEETPRRRRRSPAIRRRTDFAPFGSSDIWDPFPANRTLTQMMDSLNRLFDGFLPSRTDGDVVENFRVPYDIMEDEKSYKLRFDMPGLGKEEVKVGIEDGTLVITGEHSEESQKDNWTSRSHGSYNTRIILPDNVHLEETKAEMKNGVLQVFVPKVEEAKSQSLIDVKV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
44		33	66		0.997452
891	85		14		0.993533
997		66	33		1.0
1005		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain