SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene18000

Length: 1670 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene18000 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAL24204.1\| AT5g18630/T1A4_10 [Arabidopsis thaliana] gb\|AAN31885.1\| putative triacylglycerol lipase [Arabidopsis thaliana] dbj\|BAE99159.1\| triacylglycerol lipase-like protein [Arabid	-	-	58%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	lipase precursor	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HSE7

Fln msg:

Fln protein: MEHGGPHNLKYSILLAFICIFVLGGGRELRSNTPDHNNRGHVYNRTLAEILVQYASAVYMDDLSALMSWTCSRCNGLTEGFQVVELIVDVQHCLQAFVGVAEDINAIVIAFRGTQERSLQNWVEDLFCKTLDLNYPNMPGAMVHYGFYSAYHNTTLRPHVVEAVQKAQKQRDGLQIIVTGHSMGGAMAAFCALDLTVNFGATDVEVFTFGQPRIGNSVFATSYNNFVPKTIRVTHEHDIVPHLPPYYTYFPQRTYHHFPREVWLYNLGVGSLRYEVEKVCDGSGEDPSCSRSVSGNSVADHLQYYGVSLQAESWGSCGIPWNSQINKNDEKVEVEIKSSVDSRAPGSVTEGKMDNGQHSAL*

Protein Length: 363

Fln nts: CGTCGTGACCTTGGCTATCACTCAGTGTTATGCCAATTGTTAATTTTCAACTCACTGAAATCAAACGGAATTTGCGTTGAAATGGAAAACGCTCGTTGGCGTCTCCTCTGAAGATTTGACAAACAAATGCGTGGGGTTCCTGTATATGACACACCAATTAAAGTTAAATCCCCACGCAACGCCCAGCTCTGAGTTCTGATTCCACAATTTGGATGTAACGAATAGAAAGGCTGGCCATTATCAAAACCTTCTCACTGCCCGGAAAAATCACGTTAAATTTCCACATTAAGAGAGAAATTTCAGTAACTTCGGAGTCGCAGGAATTTGCGAAGAGTTTCAACAAAGGTT_-_ATGGAGCATGGTGGACCACATAATCTCAAATATTCAATTTTATTGGCTTTTATCTGTATATTTGTACTTGGTGGAGGAAGAGAGTTGAGGTCAAATACTCCGGACCATAATAACCGTGGCCATGTCTATAATCGAACACTTGCTGAGATACTTGTGCAATATGCTTCTGCGGTCTATATGGATGATTTGAGTGCTCTAATGTCTTGGACTTGTTCTAGGTGCAATGGTTTGACTGAGGGTTTTCAGGTGGTAGAGCTTATAGTTGATGTACAGCACTGCCTTCAGGCTTTTGTGGGTGTGGCAGAAGATATCAATGCAATTGTAATTGCATTCAGGGGTACTCAAGAAAGGAGCTTACAGAATTGGGTAGAGGATTTATTCTGTAAGACACTTGATCTCAACTATCCTAATATGCCTGGTGCAATGGTACATTATGGATTTTACTCTGCTTATCACAACACAACCTTACGACCACATGTTGTAGAAGCAGTTCAGAAAGCTCAGAAACAGAGAGATGGGTTACAGATTATTGTTACTGGGCATTCAATGGGCGGGGCTATGGCTGCTTTCTGTGCTCTTGATCTTACGGTAAACTTTGGAGCAACTGATGTGGAGGTTTTCACCTTTGGTCAACCTCGTATTGGCAATTCAGTTTTTGCAACTTCCTACAATAACTTTGTTCCAAAAACAATACGTGTCACCCATGAACATGATATTGTTCCACATTTGCCTCCATATTACACTTATTTTCCTCAGCGGACATACCACCATTTCCCGCGAGAGGTGTGGCTTTACAATCTTGGAGTGGGTAGTTTAAGATATGAGGTTGAAAAAGTTTGTGATGGCTCTGGTGAAGATCCATCATGCAGCAGATCAGTATCTGGTAACAGCGTTGCAGATCATCTGCAGTACTATGGTGTAAGCTTGCAAGCAGAATCATGGGGTTCATGTGGAATTCCCTGGAATTCTCAGATAAACAAGAATGATGAGAAGGTAGAAGTTGAGATTAAATCTTCAGTTGATTCAAGGGCACCTGGCAGTGTGACTGAAGGGAAAATGGACAATGGACAACACTCTGCTCTTTAG___TATTGGAAAGAATTCCATATTCTTTCAATTGTACAGTCTGTAACATGCATCAATTATTTTAGGTATTGTATTATTGATGATCTCAAGATTTTAAATATTTGACAGCAATACAATTTGCTCGAGCCAAAAAAAATCAAGGCTCAACTGTTATCTGTGGCTGATCTCATTTCATGTATAAGTTGTAATTTTGCTTTAACTGTATAATAGTATATCTATATAGTACTTTTAAATGCCCA

Fln Alignment:

Contig18000___KYSILLAFICIFVLGGGRELRSNTPDHNNRGHVYNRTLAEILVQYASAVYMDDLSALMSWTCSRCNGLTEGFQVVELIVDVQHCLQAFVGVAEDINAIVIAFRGTQERSLQNWVEDLFCKTLDLNYPNMPGAMVHYGFYSAYHNTTLRPHVVEAVQKAQKQRDGLQIIVTGHSMGGAMAAFCALDLTVNFGATDVEVFTFGQPRIGNSVFATSYNNFVPKTIRVTHEHDIVPHLPPYYTYFPQRTYHHFPREVWLYNLGVGSLRYEVEKVCDGSGEDPSCSRSVSGNSVADHLQYYGVSLQAESWGSCGIPWNSQINKNDEKVEVE
B9HSE7_______________RWFILAIFVCLLAFSCGRELMAEHKHADNHLTAYNHSLATILVEYASAVYMSDLTQLFTWTCPRCSGLTAGFDIIELLVDVEHCLQSFVGVAKDLNAIVIAFRGTQEHSIQNWIEDLYWKQLDINYPGMPDAMVHHGFYSAYHNTTIRPGILNAVERAKKYYGDLNIIVTGHSMGGAMAAFCGLDLVVNTEAKNVQVMTFGQPRVGNAAFASYYSQLVPNTIRVTNDHDIVPHLPPYYRYFPQKTYHHFPREVWLHNIGVGSLVYEVEKVCDGSGEDPDCSRSVAGNSIADHLVYFGVELMCETWRSCGIVMDS-LAKEYGKMDVK

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
150	33	66			0.997452
293	16	83			0.994512
294		83	16		0.994512
295		83		16	0.994512
296			16	83	0.994512
297	16			83	0.994512
298		16	83		0.994512
300	83		16		0.994512
301		16		83	0.994512
305		83	16		0.994512
307		16	83		0.994512
309	83	16			0.994512
312		16		83	0.994512
313			16	83	0.994512
1020	25			75	1.0
1041	90		10		0.90298
1279	90		10		0.90298
1294			16	83	0.999991
1303		16		83	0.999991
1305	16			83	0.999991
1361		14	85		0.993533
1362	85	14			0.993533
1363	85	14			0.993533
1364	14		85		0.993533
1427		16		83	0.994512
1474	75		25		1.0
1498		14	85		0.993533
1499		14	85		0.993533
1500		14	85		0.993533
1501		14	85		0.993533
1541			80	20	0.995493
1542		80	20		0.995493
1545			20	80	0.995493
1548	20			80	0.995493
1549		20		80	0.995493
1550	20			80	0.995493
1552		20		80	0.995493
1558		80	20		0.995493
1559			20	80	0.995493
1562	80			20	0.995493
1563	20	20			0.99255
1566		20	80		0.995493
1618	66	33			0.997452
1619		33	66		0.997452
1620		33		66	0.997452
1621		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain