SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17942

Length: 929 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17942

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	pentatricopeptide repeat-containing protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 309 - 370

Fln protein: VVTLAVTQMIVGYALHGHGKDALQFFKQMQKEDIYPDRVTFIGVLSACNHAGLVDEGRQYFDSMSGEYLIIPSMEHYACMVDLLGRAGHLDEAHALIKKMPFQPNASVWGSLLGACRIHYNVELGECVAKNLFELEPENAGNYVLMSNIYAAAARWDDAAQMRKMMKDREVKKLPGCSWIHVNRRVHAFSVGGKLHPQMAEIIEMLQTLSLQMKKAGYIAKTSFVLHDVEEEEKEHVLCGHSERLAIALGLISTFPATTIRVIKNLRMCGDCHIATKFISKIVDREIIVRDSNRFHHFKDGLCSCNDYW

Protein Length: 310

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGATTGTTGGTTATGCGCTTCACGGTCATGGTAAGGATGCTCTCCAATTTTTTAAGCAAATGCAAAAGGAAGATATCTATCCAGATCGTGTTACCTTTATTGGTGTTTTGTCTGCGTGCAACCATGCAGGCCTAGTTGATGAGGGTCGACAATACTTTGATTCCATGAGTGGAGAATATTTAATAATACCCAGCATGGAGCACTATGCATGCATGGTTGACCTTCTTGGACGGGCTGGGCATTTGGATGAGGCACATGCCCTTATCAAAAAAATGCCATTTCAGCCTAATGCCTCTGTTTGGGGATCCTTGCTCGGTGCTTGCAGAATCCATTACAATGTAGAGCTAGGAGAATGTGTAGCTAAAAACCTTTTTGAGCTGGAACCTGAAAATGCTGGAAATTATGTCCTGATGTCCAACATATATGCTGCTGCTGCTAGGTGGGATGATGCAGCTCAAATGAGAAAAATGATGAAAGACCGGGAAGTAAAGAAGTTACCAGGATGCAGCTGGATACATGTTAACAGAAGGGTGCATGCTTTTTCTGTAGGAGGAAAATTGCACCCACAAATGGCAGAAATCATTGAGATGCTACAAACATTGTCTTTGCAGATGAAGAAAGCTGGTTACATCGCCAAAACAAGCTTTGTTCTGCATGATGTGGAAGAGGAGGAGAAGGAACATGTTCTGTGTGGCCACAGTGAGAGGTTGGCTATTGCCTTGGGGCTTATTAGTACATTCCCAGCCACAACTATTAGGGTCATTAAGAACCTTCGTATGTGTGGTGACTGCCACATCGCCACCAAGTTTATCTCGAAGATAGTTGACCGAGAAATTATTGTAAGAGATTCCAATCGCTTTCATCATTTTAAGGATGGATTGTGTTCTTGCAATGACTATTGGT

Fln Alignment:

Contig17942___MIVGYALHGHGKDALQFFKQMQKEDIYPDRVTFIGVLSACNHAGLVDEGRQYFDSMSGEYLIIPSMEHYACMVDLLGRAGHLDEAHALIKKMPFQPNASVWGSLLGACRIHYNVELGECVAKNLFELEPENAGNYVLMSNIYXXXXXXXXXXQMRKMMKDREVKKLPGCSWIHVNRRVHAFSVGGKLHPQMAEIIEMLQTLSLQMKKAGYIAKTSFVLHDVEEEEKEHVLCGHSERLAIALGLISTFPATTIRVIKNLRMCGDCHIATKFISKIVDREIIVRDSNRFHHFKDGLCSCNDYW
A9P0W0_______________MISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
303	33	66			0.997452
306			33	66	0.997452
584	75	25			0.996473
585	75		25		0.996473
587		25		75	0.996473
589		75		25	0.996473
590	75		25		0.996473
591	25	75			0.996473
594	75			25	0.996473
595		75		25	0.996473
596	75		25		0.996473
597	75		25		0.996473
598	75	25			0.996473
601			75	25	0.996473
605			75	25	0.996473
606	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
451	463	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain