SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17929

Length: 1651 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17929

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S6U6_RICCO	-	-	5.0e-39	62%
FL-Next	tr=Transcription factor, putative; Ricinus communis (Castor bean).	-	-	0.0	65%
Blast2go	rwp-rk domain-containing protein	-	-	1.4013e-45	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant regulator RWP-RK	IPR003035	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S6U6

Fln msg:

Fln protein: MCKEDNPNSIPNPRQPITPYLKGCSSCHPNEVSLRTCNNSRCLEKENQTADQKSSLSIADMAVFQSIERSHAPQSSKDDASEDSSMLCCKKTNVELSSSAGVKGQKRRASSEEKDESRQIHRAPTQRVANIALKDLAKYFDVPITEASRSLKVGLTVLKRKCREFGIPRWPHRKIKSLDSLIQDLQEEAKRQEREDEAAAMAAMKRTRILETERQKIEKKPGIDIQKDTKRFRQDIFKRKHKARALKKKYD*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTATTCTCCATTATAACGTCGTGACCTTGGCTGTCACTCACAATTCCCAATATTCTAAACCTAGCCAGAAACCCTGCGTTGAATACCATACCAGAACTAGCAATTGACCTCGATCGCGTTGCAAGATACGGACAAGCAGTAGATTCTTCTCACCCTCGGAAAAAATTGGGCGAGAAAATATTGAGCTGTGCATTACCTGACACGCAGTCCAGTTTCCTTAGCATTGAGGGTTTTTGGCCTGCTATTCCTGGCTTAACAACCGTGCAGGACTGTATTGATGATGCAGATAGGCCCTCCATTGTTGTTGAATGTCCTCTGACAATCGATCAGATCCACCGACACCTAGGCTATCACAAAC_-_ATGTGCAAAGAAGATAACCCTAATTCTATCCCTAACCCCAGGCAACCAATCACCCCATACCTGAAAGGGTGTTCATCTTGTCACCCAAATGAAGTAAGCTTAAGAACATGCAATAATTCAAGATGCCTTGAAAAGGAAAATCAGACTGCTGATCAGAAGTCAAGTCTAAGTATAGCAGACATGGCAGTCTTCCAGTCAATTGAACGCAGCCATGCACCACAGAGTTCAAAGGATGATGCTTCTGAGGATTCATCAATGTTATGCTGCAAGAAAACTAATGTGGAGCTTTCCAGTAGTGCTGGTGTAAAAGGTCAGAAGAGAAGGGCATCAAGTGAGGAGAAAGATGAGAGTAGGCAAATCCACCGAGCACCCACCCAGCGTGTTGCCAACATTGCACTGAAGGATCTTGCAAAATATTTTGATGTGCCAATCACTGAAGCTTCAAGGAGTTTGAAGGTAGGGCTTACAGTCTTGAAAAGGAAATGTAGAGAATTTGGCATCCCTCGCTGGCCACACAGGAAAATCAAGTCGCTTGATAGTCTCATACAGGATCTACAGGAAGAAGCCAAGAGACAGGAGAGAGAAGATGAAGCTGCAGCTATGGCAGCAATGAAAAGAACAAGAATATTGGAAACTGAGAGACAAAAGATTGAGAAGAAACCCGGAATAGACATCCAAAAAGACACCAAGAGATTTCGACAGGACATATTTAAGAGAAAGCACAAGGCAAGAGCTCTTAAAAAGAAGTATGATTAA___ACAAAGTCTTTCGGTAGAAATCACATGAGAGAAGATGGAGATCCATCAAAATAAGTTCCATCAGAAGAAGTTCCATCAGTTTCCACCATCCTAACATTGATGATAGATAAAGTCAGAACTTCCTCATCTGCTAATTAATTATTTGTGTCTATCTTTTGTTTTTTGTGACAGAATTTTCAGCAAATAAATTCTGACAACTTCCACAGTTTATTGCCAACAAATTTGATGTAGAACGACATGAACTCTTTTTGTGGCTTGGTGCAGAAATCTTACTTCGTCAATTTGTTGTCAAAAAGACTCTGCCTGTAAATGTATGAGGTGTTAAATTTCAAATGTTTGGAGATAAGTCAGTTTGGTTATTGACGATACAGATGTTTGTAACGCTATAAATTTTCAAATTCATCAAAGCAAGGCAAGAAGTCTATTCATTGTTGCCCAAATGCTCTCAGAACTTGTATATGGACAAAATATCCATCCATTAAGTGATTAATCGATATAACAGTAACATTG

Fln Alignment:

Contig17929___RRASSEEKDESRQIH---RAPTQRVANIALKDLAKYFDVPITEASRSLKVGLTVLKRKCREFGIPRWPHRKIKSLDSLIQDLQEEAKRQEREDEXXXXXXXKRTRILETERQKIEKKPGIDIQKDTKRFRQDIF
B9S6U6_______________RKQQIELRDPGRAAKKKKRAATEDIARIALEDLVKYFDLPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDSLIRNLQEEAERQKQENEDAAMAVAKRQRMLEREKETIERKPFMEIQSETKRFRQDVF

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
351	88		11		0.923564
358		88	11		0.923564
360		11	88		0.923564
361	88	11			0.923564
363		88		11	0.923564
365	88		11		0.923564
373	11			88	0.923564
451		20	80		0.995493
452		60	40		1.0
534	33	66			1.0
587	66			33	1.0
589		50		50	1.0
593		50		50	1.0
619			50	50	1.0
620	50		50		1.0
655		57		42	1.0
658	42		57		1.0
671	16		83		0.994512
677		71		28	1.0
701	14	85			0.993533
738	20		80		0.999996
778		77		22	0.999999
814	25		75		1.0
821	87		12		0.992554
924	88		11		0.923564
977	36		63		1.0
979	63		36		1.0
997	63	36			1.0
1032	83			16	0.994512
1033	83	16			0.994512
1063		66		33	1.0
1255	66		33		0.997452
1257		33		66	0.997452
1260	33		66		0.997452
1311			75	25	0.996473
1315	25		75		0.996473
1336	25	75			0.996473
1339	75		25		0.996473
1374		25		75	0.996473
1380	25		75		0.996473
1383	75		25		0.996473
1386	75	25			0.996473
1395	25			75	0.996473
1397	25			75	0.996473
1414		75	25		0.996473
1422	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain