SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17858

Length: 736 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17858 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endonuclease III [Arabidopsis thaliana] gb\|AAD26474.2\| putative endonuclease [Arabidopsis thaliana] gb\|AEC08549.1\| endonuclease III [Arabidopsis thaliana]	-	-	3.0e-34	75%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%
Blast2go	endonuclease iii	-	-	1.4013e-44	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	base-excision repair	GO:0006284	Biological Process	1.4013e-44	83%
Blast2go	DNA N-glycosylase activity	GO:0019104	Molecular Function	1.4013e-44	83%
Blast2go	chloroplast nucleoid	GO:0042644	Cellular Component	1.4013e-44	83%

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
121		75		25	0.996473
216	83	16			0.994512
293		57		42	1.0
329		12		87	0.992554
375		85		14	0.993533
378		85		14	0.993533
379		85	14		0.993533
383	85		14		0.993533
384	85	14			0.993533
387	14			85	0.993533
388		85	14		0.993533
389			14	85	0.993533
391	85	14			0.993533
394	85		14		0.993533
395	14		85		0.993533
397	85		14		0.993533
459			88	11	0.923564
460		88	11		0.923564
470	88		11		0.923564
471	88	11			0.923564
472	88	11			0.923564
473	88		11		0.923564
474	11	88			0.923564
475			11	88	0.923564
476	88		11		0.923564
541		10	90		0.90298
543	90			10	0.90298
544			90	10	0.90298
577			85	14	0.993533
578		85	14		0.993533
579	14	85			0.993533
580	85		14		0.993533
581	85			14	0.993533
584	14			85	0.993533
585			14	85	0.993533
592		85		14	0.993533
594	14			85	0.993533
595		14		85	0.993533
596			14	85	0.993533
598			14	85	0.993533
695			33	66	0.997452
696	33	66			0.997452
697		66	33		0.997452
699			33	66	0.997452
700	33		66		0.997452
701		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
222	233	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain