SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17857

Length: 1186 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17857

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exostosin family protein [Arabidopsis thaliana] emb\|CAB37544.1\| putative protein [Arabidopsis thaliana] emb\|CAB80469.1\| putative protein [Arabidopsis thaliana] gb\|AAK93666.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45007.1\| unknown protein [Arabidops	-	-	5.0e-14	33%
FL-Next	sp=Probable glycosyltransferase At5g03795; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	29%
Blast2go	protein	-	-	6.09412e-21	55%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9FFN2

Fln msg: Distance to subject end: 212 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 196 - 518

Fln protein: MAERKMAWGIFAAILMSVLPLVIHLPKEVCGISNQGSTLPNILYENTDIGVNERTLLSTDAVHNNLYLFASTFEANYERRDLGCHIFIYPRKHHDFGSPEWCSNRTFRDISKPVAMFYESLVTSAFTTDDPEEAHLFFVPFSIDALRITLATHKSRFLRRYIDGLRTEYPYWNRTLGADHFYVSCEGIDIDSSRNV

Protein Length: 197

Fln nts: TAATGTAACCAAAGCTGAAGATCAAACCAAGTCACCGCTTATCCAATTATACTTGGTCAGACTCCCTTAGTTTTCAAACCGGAGTGGAATGCATCTCCACGCTTTCAGGAATTCAGACTGTGCAGAAAACGATGGCAAGCAAGTTCTGTGCATATACTTTTTCCTCTTGGAGAATTTTTCCAAGTATGCCGTCGTGACCTTGGCTGTCACTCAAGTCTATACAAGTATAATATAGTTTTTCTAACTTTTGGTCCATACAACAATGATATACCTTGAAAAATCCTCGAATAGGAGTTTTACCCAAAAGGCAGTATACAGAACTTGCTTTGCCATCGTTATTCTGCAGTGTCTTAAGCGTGGAGATGGATCCCACTCCGGTTTGAAAACTAAGGGAGTCGATCCAAGCGCAATTATGACTTATATGGGCAACGGACTCTTCCGTTGGTCCCCTGACAGTGATAGGGAGGTACGACTTTCACAAATGTTTGTCCGCCCGCACGCCACAACCAGCTCTGGAGTTCTCATCCTTGTGTCAATGCTAAATCCTTCAAAGAACTCGTCTCACATTCATACGTTGCAGGCCAAGATATACTAAA_-_ATGGCAGAGAGGAAAATGGCATGGGGGATTTTTGCAGCGATCCTGATGTCGGTATTACCACTGGTTATTCACCTTCCTAAAGAAGTCTGCGGGATCAGCAATCAAGGTAGCACATTGCCTAACATTCTCTATGAAAATACAGATATCGGTGTTAATGAAAGAACCCTTCTATCTACAGATGCAGTCCACAATAATTTATACCTTTTTGCATCAACATTTGAGGCAAATTATGAGCGTCGTGACCTTGGCTGTCACATTTTTATTTACCCTCGTAAGCACCATGATTTTGGGTCACCTGAGTGGTGCAGCAACCGGACGTTTAGAGACATCAGTAAACCTGTGGCAATGTTTTATGAAAGCCTTGTGACTAGTGCCTTTACTACAGATGATCCAGAAGAAGCCCATTTGTTCTTTGTGCCGTTTTCCATTGATGCCCTGAGAATCACTTTGGCCACACATAAATCAAGGTTTTTGAGAAGATATATAGATGGACTGAGAACTGAGTATCCATATTGGAATAGAACCCTAGGTGCAGACCATTTTTATGTTTCGTGTGAGGGAATAGATATAGATTCTTCTAGAAATGTTGT

Fln Alignment:

Contig17857___LYLFASTFEANYERRDLGCHIFIYPRKHHDFGSPEWCSNRTFRDI-SKPVAMFYESLVTSAFTTDDPEEAHLFFVPFSIDALRITLATHKSR-------FLRRYIDGLRTEYPYWNRTLGADHFYVSC
Q9FFN2_______________MYWNAKVFHRSYLEMEKQFKIYVYKE-----GEPPLFHDGPCKSIYSMEGSFIYEIETDTRFRTNNPDKAHVFYLPFSVVKMVRYVYERNSRDFSPIRNTVKDYINLVGDKYPYWNRSIGADHFILSC

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
190		66		33	0.997452
191	33		66		0.997452
193	33	66			0.997452
196			66	33	0.997452
197	66		33		0.997452
199	33	66			0.997452
201	33			66	0.997452
203	33		66		0.997452
207	33			66	0.997452
208	33	66			0.997452
210	33	66			0.997452
212		66	33		0.997452
213	66			33	0.997452
240		33		66	0.997452
312		50		50	1.0
313	50		50		1.0
315	50	50			1.0
316		50	50		1.0
317	50			50	1.0
320	50	50			1.0
330		50		50	1.0
331	50		50		1.0
357	75	25			1.0
363	25		75		1.0
364	75	25			1.0
365		25	75		1.0
366	75			25	1.0
370	75	25			1.0
372		75	25		1.0
373		75		25	1.0
379	25	75			1.0
451		90		10	0.90298
453		90	10		0.90298
458	90	10			0.90298
459			90	10	0.90298
462	90		10		0.90298
463		10		90	0.90298
464	90			10	0.90298
466			90	10	0.90298
467		10	90		0.90298
470		10	90		0.90298
474	10		90		0.90298
766	33			66	0.997452
835	25		75		0.996473
836	25			75	0.996473
837	25	75			0.996473
843		75		25	0.996473
846		25	75		0.996473
847	25		75		0.996473
848	25	75			0.996473
851			75	25	0.996473
855	25	75			0.996473
858	50		25	25	0.995533
859	25	25		25	0.997389
860	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain