SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17856

Length: 1774 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17856 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] gb\|AAR24228.1\| At1g30300 [Arabidopsis thaliana] gb\|AAR92355.1\| At1g30300 [Arabidopsis thaliana] gb\|AEE31204.1\| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	hydrolase-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7TKC4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 326 - 406

Fln protein: MDSDQCFSNGDSNGVKSGEGSALIFMGTGCSSGVPSARCLMQPSDPPCEVCHMAMSSPPEANKNYRCNPSLLIDHEEEDGNHHYILIDVGKDFKEQVFRWVLRYKIPQIDAIILTHEHADALLGLDDVRSVQPYNRNNDIEPTPIFVNQFTMDSVMVKFPYLVQKKLKEGQELRRVAQFDWRIIESSCENPFNVAGLQFTPLPVMHGEDYVALGFLFGKNTRVAYISDVSRFPDRTEYVISKSGGGQLDLLILDTLYKKGSHNTHFCLPQSLEAVKKIQPKRALFVGMTHEFEHSRDNEELAEWSKREGIDVQLAYDGLRIPIDL*

Protein Length: 327

Fln nts: ATGGGAATCCAACAAACTCGAAGAAGGAAAATGCATAATCGCACGTAACCCCCTATACCAAGAAAAAGAAAAGTATTTGAAGGCTTGGAATCCAACCATGTTATTAACATGTTAGATGAATTGGATGCATGTAGATCCATGTAGGTTCTGGCAGCCAAAACACTGCGTCTATCCTACTCAACCTGCCTTGAACTCTTTAAAGCATCTGTTTATCAGGTAGATCCAACCTGCCGAGACAATTCAGTGTACTTTTGCAATTAACAATTTAATTCAGTATACCATCCTGGGCGTCACAGGTTGGATCCGCTCTCAAATCGAA_-_ATGGACTCAGACCAGTGCTTTAGTAATGGAGATTCTAACGGGGTTAAATCTGGCGAAGGATCTGCTTTGATATTCATGGGAACCGGGTGTTCATCTGGAGTGCCGAGTGCAAGGTGCCTGATGCAGCCATCGGATCCTCCGTGTGAAGTTTGCCACATGGCAATGTCGAGCCCTCCTGAAGCCAATAAAAATTACAGGTGCAATCCGTCACTTTTGATTGACCATGAAGAAGAAGATGGAAATCATCACTACATTTTGATCGATGTTGGAAAGGATTTTAAGGAGCAAGTTTTCCGATGGGTTCTTCGCTATAAAATTCCTCAGATAGATGCTATTATTTTGACACATGAACATGCAGATGCATTGCTGGGTTTGGATGATGTTAGGAGTGTACAACCATATAACCGTAACAATGATATTGAACCTACACCCATTTTTGTCAACCAATTCACAATGGACAGTGTTATGGTAAAATTTCCTTATTTAGTACAAAAGAAATTAAAAGAAGGGCAGGAATTACGTCGGGTTGCTCAATTTGACTGGAGAATAATAGAAAGTAGTTGCGAGAACCCTTTCAATGTGGCGGGCCTCCAATTCACTCCTTTGCCGGTAATGCATGGAGAGGACTATGTGGCCCTTGGATTTCTATTTGGGAAAAATACTAGAGTAGCATACATATCTGATGTTTCACGTTTTCCAGATCGTACAGAATATGTGATATCTAAAAGTGGAGGTGGACAGTTGGATTTGCTTATTCTTGATACACTATACAAGAAGGGATCACATAATACTCACTTTTGTTTACCACAAAGCCTTGAAGCCGTGAAGAAAATTCAACCAAAGCGCGCCCTGTTTGTTGGGATGACTCATGAATTTGAACACTCTAGAGACAACGAAGAGTTGGCAGAGTGGTCTAAGAGAGAAGGAATAGACGTTCAGTTGGCTTATGACGGGCTGAGGATACCCATTGACCTTTAATGGTCAATGCTTGACATGGAATTTTGTCCTTTCTCTTGCCCCCTTCTGTTGCCAAATCTCCACTATCTGCTGGCAGGGGGGGCACCACTGGTTTCCATGTTATTGAACATTTCTGTGAGATTTTCTGCTGGCAGGAGGGGCACCACTGGTTTCCATATTATTGAACATTTCTGTGAGATTTTGTCACAAATACGCAACTTCAAACAGTAGATCACAAGCAGCATGATAATAAAATCTGAGTGCTGAGATCTACATTGAACAGTTAAATCGCATTCTTTGTTACGGTTATAATTGTCGCTAATTGTATTCTTGTAAAGACACATGTGCAACTAAGCATGTGGCCTAAAATTCGGCCAAAAGTTGATACATGTACACCGGGAAGGCACTACCCGAGAATGATATTTGACCATTAATTGCATTTGAAAAGAAAAAGAAGGCCAGGTGCAGTTTACAGCCCAGCGGAATGAGATAGTAAGG

Fln Alignment:

Contig17856___EMDSDQCFSNGDSNGVKSGEGSALIFMGTGCSSGVPSARCLMQPSDPPCEVCHMAMSSPPEANKNYRCNPSLLIDHEEEDGNHHYILIDVGKDFKEQVFRWVLRYKIPQIDAIILTHEHADALLGLDDVRSVQPYNRNNDIEPTPIFVNQFTMDSVMVKFPYLVQKKLKEGQELRRVAQFDWRIIESSCENPFNVAGLQFTPLPVMHGEDYVALGFLFGKNTRVAYISDVSRFPDRTEYVISKSGGGQLDLLILDTLYKKGSHNTHFCLPQSLEAVKKIQPKRALFVGMTHEFEHSRDNEELAEWSKREGIDVQLAYDGLRIPIDL
D7TKC4_______________EMESGNLAENGHCSDAAGEPRSSLILLGTGCSSVVPNAMCLIQPSDPPCNVCFQSLSLPPERNPNYRCNTSLLIDYCQNNGEHKYILIDVGKTFREQVIRWFTFYKIPQVDSIILTHEHADAVLGLDDMRAVQPFSPTNDISPTPVYLSQYAMESIATKFPYLVKKKLKEGQELRRVAQLDWKIIESNHEKPFVASGLQFVPLPVMHGEDYLCLGFLFGEKCKVAYISDISRFPSSTEYVISKNGGGQLDLLILDTLYKKGSHNTHFCFPQTLEAVKRICPKRALLVGMTHEFDHHKDNETLMEWSRREGIPVQLAHDGLRVPIDL

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
373	11			88	0.999952
374			11	88	0.999952
375		88		11	0.999952
376	88		11		0.999952
378		11		88	0.999952
380	88		11		0.999952
383	12			87	0.999964
386	87			12	0.999964
387	87	12			0.999964
390		87	12		0.999964
454		25	75		1.0
534	10			90	0.90298
535			10	90	0.90298
537		10		90	0.90298
538	10	90			0.90298
539	10			90	0.90298
540		90	10		0.90298
541			10	90	0.90298
543	90	10			0.90298
547		90	10		0.90298
550			11	88	0.923564
599		80		20	0.995493
600	80		20		0.995493
602		80	20		0.995493
603	80			20	0.995493
604	80		20		0.995493
609		20	80		0.995493
612	20		80		0.995493
613	20	80			0.995493
615		80	20		0.995493
617		20		80	0.995493
618	20			80	0.995493
619		20	80		0.995493
621	20			80	0.995493
622		20		80	0.995493
1277		66		33	0.997452
1317		75		25	0.996473
1465		22		77	0.999999
1474	22		77		0.999999
1534		77	22		0.999999
1552			22	77	0.999999
1571	77		22		0.999999
1636	71		28		1.0
1641			71	28	1.0
1643	14		14	71	0.984337
1644	28	71			1.0
1646	85	14			0.993533
1649	14			85	0.993533
1650	14		85		0.993533
1651		71		28	1.0
1653	14		14	71	0.984337
1654		71	28		1.0
1655		71		28	1.0
1656	85			14	0.993533
1657	85	14			0.993533
1658	14			85	0.993533
1660			28	71	1.0
1701	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain