SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17793

Length: 1338 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17793 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	4-nitrophenylphosphatase, putative n=1 Tax=Ricinus communis RepID=B9RM24_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	haloacid dehalogenase-like hydrolase domain-containing protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%
Blast2go	apoplast	GO:0048046	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	2-phosphoglycolate phosphatase, eukaryotic	IPR006349	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIA	IPR006357	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9T8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 243 - 311

Fln protein: S*PWLSLNRKKFEALGLSVGEEEIFPSSFAAAVYLKSIDFPHEKKVYAIGGEGILQELELCGIEGIGGPEDGDKKIEFKPGFFMEHDRDVGAVVVGFDQFINYYKIQYATLCIRENPGCLFIATNCDAVGHFTDAQEWAGGGSMVGAIKGSTQKEPLVVGKPSLFMMDYISKKFQIKKSEICMVGDRLDTDILFGKNGGCKTLLVLSGVTTLSMLQNPENSIQPDYYTDKLSDLLAENRFEV*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGGAAGAAGTTCGAAGCGCTTGGTCTTTCAGTTGGAGAGGAAGAGATTTTTCCATCATCTTTTGCTGCAGCTGTTTACTTGAAGTCTATTGATTTCCCCCATGAAAAAAAGGTTTATGCTATTGGTGGGGAGGGGATATTGCAGGAGCTAGAGCTTTGTGGCATTGAAGGCATAGGTGGTCCGGAAGATGGAGACAAAAAGATTGAATTCAAACCTGGATTTTTCATGGAGCATGACAGAGATGTTGGGGCTGTCGTGGTTGGATTTGACCAGTTTATCAACTACTACAAAATTCAGTATGCAACACTATGTATTCGAGAAAACCCGGGATGCCTTTTCATTGCTACCAATTGTGATGCTGTTGGTCATTTTACTGATGCACAAGAATGGGCAGGAGGCGGTTCAATGGTTGGTGCAATAAAGGGATCTACTCAAAAGGAGCCTCTTGTTGTAGGAAAACCGTCACTTTTTATGATGGATTATATTTCAAAAAAATTTCAAATTAAAAAGTCAGAGATATGCATGGTAGGCGATAGATTGGACACTGACATTTTATTTGGCAAAAATGGTGGTTGCAAAACGCTTCTTGTTCTTTCAGGTGTCACTACTTTATCCATGCTTCAGAACCCCGAAAATAGTATTCAGCCAGATTATTATACAGATAAATTGTCAGATCTCCTTGCTGAGAATAGATTTGAAGTATAA___GGGTTTTAAGCACCAAGATATCTGCCGATTATGTTTTAAGTTTCAACGCATCCATTTTTGCATATGTGATTCTTTCTTTCCTATTATGATTCTTGTCTCAGACCTTCGATATTAATAATTTGATATTTTCCGTGTCATGTTCATAAGCTGTCAAAAACAAAGGCTCCACGAGTTGTGTTCTTGGTCTGATCTCAACTTTAAAATGTGTAATCATGGGATCTCTGTGTGCAGGCATGTGACACCCATGATTATGAGTAGTCCATGACATTTAAAGTTGGTTCTAGAGCAATAATATGAAGTTGTTTAGGACATCTAAAATTTTGAAGTTTAACAATTATAACTTGGATTTTCAAAAATTCTTGCCGGATTTTCTCTAAATATGACCGGAATTTCCATAACCTTCTGGGCATCTCCTCCGCTTTGTTAAACTACGCGCATTAATATTCTCAAACCATAAAAGGAAGCGCTATTGGATACAATGATCTTGATCCACTGACATAAAGCGTCTTCGATGTTCTTTTGTGATGAATGTTGCAGTTTTCTGTTGTAACAGCCGATACAATGATTGAGTGCATGACCCTATGATTCCTAGAAAGTATGAAGCGAT

Fln Alignment:

Contig17793___RKKFEALGLSVGEEEIFPSSFAAAVYLKSIDFPHEKKVYAXXXXXXXXXXXXXXXXXXXXXXXXXXKIEFKPGFFMEHDRDVGAVVVGFDQFINYYKIQYATLCIRENPGCLFIATNCDAVGHFTDAQEWAGGGSMVGAIKGSTQKEPLVVGKPSLFMMDYISKKFQIKKSEICMVGDRLDTDILFGKNGGCKXXXXXXXXXXXXXLQNPENSIQPDYYTDKLSDLLAENRFEV
D5A9T8_______________RKKFEALGLSVGEEEIFPSSFAAAVYLKSIDFPQEKKVYVIGGEGILQELELCGIEGIGGPEDGDKKIDFKPGFFIEHDKDVGAVVVGFDQFINYYKIQYATLCIRENPGCLFIATNCDAVGHFTDAQEWAGGGSMVGAIKGSTEKEPLVAGKPSLLMMDYISKKFQIKKSEICMVGDRLDTDILFGKNGGCKTLLVLSGVTTLSMLQSPENSILPDYYTDKLSDLLTDNSADV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
190	25		75		0.996473
432	75			25	1.0
435	75			25	1.0
442		75	25		1.0
445	25		75		1.0
446		25		75	1.0
448	25		75		1.0
449	75	25			1.0
468		16		83	0.994512
469	16			83	0.994512
471			16	83	0.994512
473	83			16	0.994512
477		20		80	0.995493
480		80	20		0.995493
481	80		20		0.995493
483	25		75		0.996473
485	75	25			0.996473
486	75	25			0.996473
489			33	66	0.997452
490	66		33		0.997452
494	66	33			0.997452
496		33		66	0.997452
497			33	66	0.997452
1103	84	15			0.999986
1129		25		75	1.0
1193	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain