SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17776

Length: 1433 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17776 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF566 multi-domain protein	-	-	2.0e-06	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2A5

Fln msg: your sequence is longer than subject: 292 - 240

Fln protein: MGHFSLSYSSSSDSEHENAVEELLSQFLDEELLKITTNPVGSRGSARQGLDPELESRYEKLKASVSNLRPPGPPQSLERCHSRLSESAEAKLPGNNPSSSPESPRDSNSSPISKGCSTSAASSPRGSSNSRPPKKTSRTFVASSPSVRSRRSCSLSPSPPRACFCGSPKKLLRSLSSKRSSGSSKMKKSESHIGEDELTAAVVSEKSKMRARHKDRVRAKDELDSLSDDEFLTDLSTFSLKGHRKQLKKVLKEEQKVNRDAEDLVKWVKQASARIDDRVLDDLLSDEEEFK*

Protein Length: 293

Fln nts: ATGGGGAAAGGGACAGGGGATCCGTAGAATGGGAAACGGGTGTGCCACTCTGTGAGAAATGGTCGCTGTAAGCGGACAATCAATTAGTGTTGA_-_ATGGGCCATTTTTCTCTTTCTTACTCTTCTTCTTCAGATTCAGAGCATGAAAATGCAGTGGAAGAGCTCTTATCTCAGTTTCTTGACGAAGAGTTGCTTAAAATCACCACCAATCCGGTCGGAAGCCGGGGCTCTGCACGTCAGGGCCTCGACCCAGAGCTGGAAAGCAGGTATGAAAAGCTCAAGGCATCGGTCTCGAACCTCAGACCTCCTGGTCCACCTCAAAGTCTAGAACGATGTCACAGCCGCCTTTCCGAGTCGGCAGAGGCTAAATTGCCTGGAAATAATCCATCGTCCTCCCCAGAGTCGCCAAGGGATTCGAACTCGAGCCCCATCAGCAAGGGTTGCAGCACGTCTGCTGCGTCTTCGCCTCGGGGGAGTTCGAACTCGAGACCCCCTAAGAAGACTTCAAGAACGTTCGTGGCGTCATCACCGTCTGTGCGCTCTCGGAGATCGTGTTCATTGTCGCCTTCTCCTCCCAGGGCTTGTTTCTGCGGGTCTCCGAAGAAGCTTTTGAGAAGTTTGAGCTCGAAGAGATCCTCGGGTTCCAGTAAAATGAAGAAATCTGAATCCCATATTGGCGAAGATGAACTCACGGCTGCTGTCGTTTCTGAGAAGTCGAAAATGAGGGCTCGGCATAAGGACAGGGTCAGGGCGAAGGACGAACTGGACTCGCTGTCTGACGATGAATTTCTGACGGATTTGAGTACTTTTTCATTGAAAGGCCATAGGAAGCAGCTCAAGAAAGTTCTCAAGGAAGAACAGAAGGTGAACCGAGATGCAGAGGATTTGGTCAAGTGGGTGAAGCAGGCCTCGGCAAGGATAGACGATAGGGTTTTAGATGACTTGCTTTCTGATGAAGAAGAATTCAAGTAA___GAACACTTAATATTATTTGCATGAAAGGTGGGAGAATGAAGGTGGAGAGAATGATCTGTTATGCAGAAAATCATTGCAGACTTTGATCCTGTCCCTTGGTTTGCGCTCTGTAAATTGGCATAAAGATACGTAAAGTGTAATAGACTATCTGAGGTCAATTAATTGTTTCCCTCAGTTTGACAAAGGCTCAAATCATGGGTGTTCATCTCGTGCTTTCCCTATGTTGGCAACAACACAAGGTTTCAAGTTTTATGATGTACATACTGGAGTCTTTGACCTTGATATACATAACAAGATTTTTGATTTGGAGCTGGTGAAGTTCAGGGTTTGAACATAATTTCATGTTTATTAGGAATCCAAGAATTCAGTGTGGCTTTGGAAGGTCCATGCCATATTTATCAATTTGAGTAATTGGCCGGCACGAGGCCTCGTAAGCCGAAGTTCGGCACGAGGGCCCTGTGGAG

Fln Alignment:

Contig17776___LESRYEKLKASVSNLRPPGPPQSLERCHSRLSESAEAKLXXXXXXXXXXXXXXXXXXP--ISKGCXXXXXXXXXXXXXXXXPKKTSRTFVAXXXXXXXXXXXXXXXXXXRACFCGXXXXXXXXXXXXXXXXXXXXXXXXSHIGEDELTAAVVSEKSKMRARHKDRVRAKXXXXXXXXXXXXXXXXTFSLKGHRXXXXXXXXXXXXVNRDAEDLVKWVKQASARIDDRVLDDLLSDEEEFK
A9P2A5_______________MESRYEKLKASVSNLRPPGPPQSLEGRHSRLSESAEAQLPGNNPTSSAESPRDSDSNSNPISEGRSTSAATSPRGNSNSRPPKKTSRTLMASSPSVRSQRSCSLSPSPPRSCFCGSPKKLLRSLSSKRSSGSCKMKKSDSHIGDDELTAAVVSEKSKMRVRNKDRGRPKDELDSLSDDEFLTDLSTFSLKGQRKQLKKALKEEQKVNRDAEDLVKWVKQASARMDDRVLDDLLSDEEEFK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
502		88	11		0.923564
504	87		12		0.992554
506	87	12			0.992554
508		87	12		0.992554
511	12			87	0.992554
513			12	87	0.992554
518	12			87	0.992554
519	87	12			0.992554
520			12	87	0.992554
521	12	87			0.992554
523			12	87	0.992554
706			20	80	0.995493
837		16		83	0.994512
926		14		85	0.993533
963		14		85	0.993533
1018	83			16	0.994512
1178		31		68	1.0
1318	70			30	1.0
1350		10		90	0.90298
1362		30		70	1.0
1406	33	66			0.997452
1407	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain